The reference sequences of the Saimaa ringed seal (Pusa hispida saimensis)
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ABSTRACT:
PROVIDER: PRJEB51013 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:Ringed seal (Pusa hispida) transcriptome
| PRJNA324831 | ENA
Project description:Saimaa ringed seal contig-level genome assembly
| PRJEB56423 | ENA
Project description:Baltic ringed seal contig-level genome assembly
| PRJEB56521 | ENA
Project description:Seasonal changes in diel haul-out patterns of the lacustrine Saimaa ringed seal (Pusa hispida saimensis) were studied using a combination of satellite telemetry and camera traps during 2007-2015. We found the haul-out activity patterns to vary seasonally. Our results show that during the ice-covered winter period before the seals start their annual molt, the peak in haul-out generally occurs at midnight. Similarly, during the postmolt season of summer and autumn when the lake is free of ice, the haul-out is concentrated in the early hours of the morning. In contrast, over the spring molting period, Saimaa ringed seals tend to haul out around the clock. The spring molt is also the only period when a slight difference in haul-out behavior between the sexes is observed, with females having a haul-out peak at nighttime while the males have a less visible diel pattern. According to our results, the diel haul-out patterns of Saimaa ringed seals are similar to the ones of marine ringed seals. Gathering information on haul-out activity is important in order to safeguard the natural patterns of Saimaa ringed seals in areas that are prone to disturbance from human activities.
| S-EPMC10316366 | biostudies-literature
Project description:There has been significant sea ice loss associated with climate change in the Pacific Arctic, with unquantified impacts to the habitat of ice-obligate marine mammals such as ringed seals (Pusa hispida). Ringed seals maintain breathing holes and excavate subnivean lairs on sea ice to provide protection from weather and predators during birthing, nursing, and resting. However, there is limited baseline information on the snow and ice habitat, distribution, density, and configuration of ringed seal structures (breathing holes, simple haul-out lairs, and pup lairs) in Alaska. Here, we describe historic field records from two regions of the eastern Chukchi Sea (Kotzebue Sound and Ledyard Bay) collected during spring 1983 and 1984 to quantify baseline ringed seal breeding habitat and map the distribution of ringed seal structures using modern geospatial tools. Of 490 structures located on pre-established study grids by trained dogs, 29% were pup lairs (25% in Kotzebue Sound and 33% in Ledyard Bay). Grids in Ledyard Bay had greater overall density of seal structures than those in Kotzebue Sound (8.6 structures/km2 and 7.1 structures/km2), but structures were larger in Kotzebue Sound. Pup lairs were located in closer proximity to other structures and characterized by deeper snow and greater ice deformation than haul-out lairs or simple breathing holes. At pup lairs, snow depths averaged 74.9 cm (range 37-132 cm), with ice relief nearby averaging 76 cm (range 31-183 cm), and ice deformation 29.9% (range 5-80%). We compare our results to similar studies conducted in other geographic regions and discuss our findings in the context of recent declines in extent and duration of seasonal cover of landfast sea ice and snow deposition on sea ice. Ultimately, additional research is needed to understand the effects of recent environmental changes on ringed seals, but our study establishes a baseline upon which future research can measure pup habitat in northwest Alaska.
| S-EPMC8629220 | biostudies-literature
Project description:Continued Arctic warming and sea-ice loss will have important implications for the conservation of ringed seals, a highly ice-dependent species. A better understanding of their spatial ecology will help characterize emerging ecological trends and inform management decisions. We deployed satellite transmitters on ringed seals in the summers of 2011, 2014, and 2016 near Utqiaġvik (formerly Barrow), Alaska, to monitor their movements, diving, and haul-out behavior. We present analyses of tracking and dive data provided by 17 seals that were tracked until at least January of the following year. Seals mostly ranged north of Utqiaġvik in the Beaufort and Chukchi Seas during summer before moving into the southern Chukchi and Bering Seas during winter. In all seasons, ringed seals occupied a diversity of habitats and spatial distributions, from near shore and localized, to far offshore and wide-ranging in drifting sea ice. Continental shelf waters were occupied for >96% of tracking days, during which repetitive diving (suggestive of foraging) primarily to the seafloor was the most frequent activity. From mid-summer to early fall, 12 seals made ~1-week forays off-shelf to the deep Arctic Basin, most reaching the retreating pack-ice, where they spent most of their time hauled out. Diel activity patterns suggested greater allocation of foraging efforts to midday hours. Haul-out patterns were complementary, occurring mostly at night until April-May when midday hours were preferred. Ringed seals captured in 2011-concurrent with an unusual mortality event that affected all ice-seal species-differed morphologically and behaviorally from seals captured in other years. Speculations about the physiology of molting and its role in energetics, habitat use, and behavior are discussed; along with possible evidence of purported ringed seal ecotypes.
| S-EPMC7319173 | biostudies-literature
Project description:Whole-genome sequencing of Arctic ringed seals
| PRJEB56329 | ENA
Project description:Whole-genome sequencing of European ringed seals
| PRJEB56317 | ENA
Project description:Mercury is found in Arctic marine mammals that are important in the diet of northern Indigenous peoples. The objectives of the present long-term study, spanning a 45-yr period, were to 1) investigate the temporal trends of total mercury (THg; muscle and liver) and selenium (Se; liver) in ringed seals (Pusa hispida) from different regions of the Canadian Arctic; and 2) examine possible relationships with age, diet, and climate parameters such as air temperature, precipitation, climatic indices, and ice-coverage. Ringed seals were collected by hunters in northern communities in the Beaufort Sea, Central Arctic, Eastern Baffin Island, Hudson Bay, and Ungava/Nunatsiavut regions (Canada) between 1972 and 2017. Mercury levels did not change through time in seal liver, but THg levels in muscle decreased in seals from Hudson Bay (-0.91%/yr) and Ungava/Nunatsiavut (-1.30%/yr). Carbon stable isotope values in seal muscle decreased significantly through time in 4 regions. Selenium-to-THg ratios were found to be >1 for all years and regions. Variation partitioning analyses across regions indicated that THg trends in seals were mostly explained by age (7.3-21.7%), climate parameters (3.5-12.5%), and diet (up to 9%); climate indices (i.e., Arctic and North Atlantic Oscillations, Pacific/North American pattern) explained the majority of the climate portion. The THg levels had a positive relationship with Arctic Oscillation for multiple regions. Associations of THg with air temperature, total precipitation, and sea-ice coverage, as well as with North Atlantic Oscillation and Pacific/North American pattern were found to vary with tissue type and geographical area. Environ Toxicol Chem 2020;39:2462-2474. © 2020 Her Majesty the Queen in Right of Canada. Environmental Toxicology and Chemistry published by Wiley Periodicals LLC on behalf of SETAC. Reproduced with the permission of the Minister of Fisheries and Oceans Canada.
| S-EPMC7756774 | biostudies-literature
Project description:Primordial follicles are important for the reproduction cycle and, therefore, also for the survival of the whole population of a species. Mammals have a large pool of primordial follicles, and it is thought that this pool represents the total number of oocytes. The aim of the present study was to determine the total primordial follicle number of juvenile ringed seals (Pusa hispida) from the Gulf of Bothnia and Greenland. Overall, 52 ovaries from two ringed seal populations (West Greenland (N = 6), Gulf of Bothnia, region in the Baltic Sea (N = 46)) were examined. All ovaries were cut into 2 mm thick slices and every slice was embedded in paraffin. Out of each tissue block, a 5 µm thick section was cut and stained with haematoxylin-eosin. The mean volume of the follicles and the total volume of primordial follicles per ovary were estimated by stereology and used to calculate the total estimated number of primordial follicles. The median of the total estimated number of primordial follicles seemed to be higher in Baltic individuals than in Greenland individuals (Gulf of Bothnia = 565,657; Greenland Sea = 122,475). This widens the total range of primordial follicles in ringed seals overall and might bear some potential for discussions regarding the influence of endocrine disruptors and environmental influences depending on different regions/populations and their exposure to various factors. Thus, this study aims to provide basic reference data of the number and mean volume of ringed seal primordial follicles.
| S-EPMC8909318 | biostudies-literature