Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

PacBio Sequel genome sequence of Aquimarina sp. strain EL43

ABSTRACT: PacBio Sequel genome sequencing of octocoral-derived Aquimarina sp. EL43

PROVIDER: PRJEB53060 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR9784244.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

PacBio Sequel genome sequence of Aquimarina sp. strain Aq78

Project description:PacBio Sequel genome sequencing of marine sponge-derived Aquimarina sp. Aq78

| PRJEB53056 | ENA

PacBio Sequel Genome Sequence of Aquimarina sp. strain Aq135

Project description:PacBio Sequel genome sequencing of marine sponge-derived Aquimarina sp. Aq135

| PRJEB48861 | ENA

PacBio Sequel genome sequence of Aquimarina sp. strain Aq349

Project description:PacBio Sequel genome sequencing of marine sponge-derived Aquimarina sp. Aq349

| PRJEB53058 | ENA

PacBio Sequel genome sequence of Aquimarina sp. strain Aq107

Project description:PacBio Sequel genome sequencing of marine sponge-derived Aquimarina sp. Aq107

| PRJEB53057 | ENA

PacBio Sequel WGS of Tursiops Aduncus

Project description:PacBio Sequel WGS of Tursiops Aduncus

| PRJEB29382 | ENA

PacBio Iso-Seq transcriptome sequencing data of multiplexed maize cDNA

Project description:Full-Length cDNA transcriptome (Iso-Seq) data sequenced on the PacBio Sequel system using 2.1 chemistry. Multiplexed cDNA library of 12 samples (3 tissues x 4 strains). Tissues: root, embryo, endosperm. Strains: B73, Ki11, B73xKi11, Ki11xB73.

2020-02-25 | E-MTAB-7837 | biostudies-arrayexpress

Complete chloroplast genome sequence of <i>Populus pruinosa</i> Schrenk from PacBio Sequel II Platform.

Project description:Populus pruinosa Schrenk plays an important role on ecological services in desert areas. The complete chloroplast genome was reported in this study using the PacBio Sequel II Platform. The chloroplast genome with a total size of 157,856 bp consists of two inverted repeats (IR, 27,673 bp) separated by a large single-copy region (LSC, 85,867 bp) and a small single-copy region (SSC, 16,645 bp). Further annotation revealed the chloroplast genome contains 111 genes, including 78 protein-coding genes, 29 tRNA genes, and 4 rRNA genes. A total of 151 simple sequence repeats (SSRs) were identified in the chloroplast genome. This information will be useful for study on the evolution and genetic diversity of P. pruinosa in the future.

| S-EPMC7782250 | biostudies-literature

PacBio Tritrichomonas foetus genome sequence

Project description:Assembled PacBio T. foetus genome

| PRJEB41567 | ENA

SequelTools: a suite of tools for working with PacBio Sequel raw sequence data.

Project description:BACKGROUND:PacBio sequencing is an incredibly valuable third-generation DNA sequencing method due to very long read lengths, ability to detect methylated bases, and its real-time sequencing methodology. Yet, hitherto no tool was available for analyzing the quality of, subsampling, and filtering PacBio data. RESULTS:Here we present SequelTools, a command-line program containing three tools: Quality Control, Read Subsampling, and Read Filtering. The Quality Control tool quickly processes PacBio Sequel raw sequence data from multiple SMRTcells producing multiple statistics and publication-quality plots describing the quality of the data including N50, read length and count statistics, PSR, and ZOR. The Read Subsampling tool allows the user to subsample reads by one or more of the following criteria: longest subreads per CLR or random CLR selection. The Read Filtering tool provides options for normalizing data by filtering out certain low-quality scraps reads and/or by minimum CLR length. SequelTools is implemented in bash, R, and Python using only standard libraries and packages and is platform independent. CONCLUSIONS:SequelTools is a program that provides the only free, fast, and easy-to-use quality control tool, and the only program providing this kind of read subsampling and read filtering for PacBio Sequel raw sequence data, and is available at https://github.com/ISUgenomics/SequelTools .

| S-EPMC7532105 | biostudies-literature

10x Genomics Chromium WGS of Tursiops Aduncus

Project description:This data and additional PacBio Sequel data were collected from the same individual for a de-novo genome assembly

2022-01-01 | E-MTAB-7310 | biostudies-arrayexpress