Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Shotgun sequencing of infant stool samples

ABSTRACT: Shotgun metagenomics of infant formula study

PROVIDER: PRJEB54991 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR10006600_1.fastq.gz	Fastqsanger.gz
	ERR10006600_2.fastq.gz	Fastqsanger.gz
	ERR10015400_1.fastq.gz	Fastqsanger.gz
	ERR10015400_2.fastq.gz	Fastqsanger.gz
	ERR10006501_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 324

Similar Datasets

Infant stool whole metagenomic sequencing

Project description:LMIC human infant stool whole-genome shotgun metagenomic sequencing

| PRJNA834762 | ENA

Shotgun metagenomics of infant formula study

Project description:Shotgun Sequencing infant stool samples

| PRJEB53994 | ENA

Diurnal rhythmicity of fecal microbiota and metabolite profiles in the first year of life: a randomized controlled interventional trial with infant formula

Project description:Microbiota assembly in the infant gut is influenced by time and duration of dietary exposure to breast-milk, infant formula and solid foods. In this randomized controlled intervention study, longitudinal sampling of infant stools (n=998) showed similar development of fecal bacterial communities between formula- and breast-fed infants during the first year of life (N=210). Infant formula supplemented with galacto-oligosaccharides (GOS) was most efficient to sustain high levels of bifidobacteria compared to formula containing B. longum and B. breve or placebo. Metabolite (untargeted) and bacterial profiling (16S rRNA/shallow metagenomics sequencing) revealed 24-hour oscillations and integrated data analysis identified circadian networks. Rhythmicity in bacterial diversity, specific taxa and functional pathways increased with age and was most pronounced following breast-feeding and GOS-supplementation. Circadian rhythms in dominant taxa were discovered ex-vivo in a chemostat model. Hence microbiota rhythmicity develops early in life, likely due to bacterial intrinsic clock mechanism and is affected by diet.

2024-01-10 | MSV000093802 | MassIVE

LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR

Project description:LMIC human infant stool whole-genome shotgun metagenomic sequencing to validate qPCR Metagenome

| PRJNA837236 | ENA

Infant stool

Project description:Preterm infant stool metagenome

| PRJNA721684 | ENA

Soy Infant Formula Is Not Estrogenic or Results in Reproductive Toxicity in Male Piglets

Project description:The current study directly compared the effects of soy formula feeding with those of estradiol or pure genistein in the neonatal piglet, an animal model which most closely resembles the human infant physiologically and in isoflavone metabolism

2021-03-31 | GSE168627 | GEO

Infant stool sample

Project description:Infant gut microbiome meta-transcriptomics

| PRJNA505710 | ENA

CHILD Infant Stool

Project description:CHILD Infant Stool Raw sequence reads

| PRJNA838575 | ENA

Powder Infant formula

Project description:Powder Infant formula Genome sequencing and assembly

| PRJNA795891 | ENA

Transcriptomic analysis of neuroinflammation and occult infection in sudden infant death syndrome

Project description:Antemortem infection is a risk factor for sudden infant death syndrome (SIDS) – the leading postneonatal cause of infant mortality in the developed world. Manifestations of infection and attendant inflammation, however, are not always apparent in clinical settings or by standard autopsy, thus enhanced resolution approaches are needed. Here we screened postmortem SIDS tissues and fluids for inflammatory markers and applied metagenomics and transcriptomics to a subset of cases to look for evidence of occult infection and inflammation.

2024-01-04 | GSE245891 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data