Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Metagenomics of Washed Rind Cheese Communities

ABSTRACT: Metagenomics of Washed Rind Cheese Communities

PROVIDER: PRJEB58160 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	eligo2weeklr.fasta.gz	Fasta.gz
	eligo12weeklr.fasta.gz	Fasta.gz
	eligo4weeklr.fasta.gz	Fasta.gz
	eligo4wgaweeklr.fasta.gz	Fasta.gz

Items per page:

1 - 5 of 58

Similar Datasets

Phages of the cheese rind

Project description:Five virulents phages isolated from a washed-rind cheese

| PRJEB48484 | ENA

The distant Microbial communities in Tibetan alpine meadow based on Geochip 4.0

Project description:Due to its high altitude and extreme climate conditions, the Tibetan plateau is a region vulnerable to the impact of climate changes and anthropogenic perturbation, thus understanding how its microbial communities function may be of high importance. Here, we report a study to profile soil microbial structural genes, which infers functional roles of microbial communities, aiming to explore potential microbial responses to climate changes and anthropogenic perturbation. Using a microarray-based metagenomics tool named GeoChip 4.0, we showed that microbial communities in treatment site were distinct, compared with those in control site, e.g. shrubland vs grassland, grazing site vs ungrazing site, or warmer site vs colder site. Substantial variations were apparent in stress, N and C cycling genes, but they were in line with the functional roles of these genes.

2013-11-16 | GSE52425 | GEO

Mozarella cheese

Project description:Viral metagenomics of mozarella cheese

| PRJNA729649 | ENA

Can cheese mites, maggots and molds enhance bioactivity? Peptidomic investigation of functional peptides in four traditional cheeses

Project description:Aside from their amino acid content, dairy proteins are valuable for their ability to carry encrypted bioactive peptides whose activities are latent until released by digestive enzymes or endogenous enzymes within the food. Peptides can possess a wide variety of functionalities, such as antibacterial, antihypertensive, and antioxidative properties, as demonstrated by in vitro and in vivo studies. This phenomenon raises the question as to what impact various traditional cheese-making processes have on the formation of bioactive peptides in the resulting products. In this study, we have profiled the naturally-occurring peptides in two hard and two soft traditional cheeses and have identified their known bioactive sequences. While past studies have typically identified fewer than 100 peptide sequences in a single cheese, we have used modern instrumentation to identify between 2900 and 4700 sequences per cheese, an increase by a factor of about 50. We demonstrated substantial variations in proteolysis and peptide formation between the interior and rind of each cheese, which we ascribed to the differences in microbial composition between these regions. We identified a total of 111 bioactive sequences among the four cheeses, with the greatest number of sequences, 89, originating from Mimolette. The most common bioactivities identified were antimicrobial and inhibition of the angiotensin-converting enzyme. This work revealed that cheese proteolysis and the resulting peptidomes are more complex than originally thought in terms of the number of peptides released, variation in peptidome across sites within a single cheese, and variation in bioactive peptides among cheese-making techniques.

2020-12-23 | PXD021426 | Pride

Cheese microbial communities

Project description:short read sequencing of distinct cheese rinds

| PRJEB57452 | ENA

GNPS - Microbes from Bayley Hazen Blue Cheese

Project description:Interactions between microbes isolated from cheese, isolation information can be found here: Title: Cheese Rind communities provide tractable systems for in situ and in vitro studies of microbial diversity Authors: Wolfe, BE; Button, JE; Santarelli, M; Dutton, RJ Journal: Cell, 2014, Accepted

2014-06-04 | MSV000078706 | GNPS

Multi-omics of the rhizosphere communities of Arabidopsis

Project description:characterization of rhizosphere communities of arabidopsis with metagenomics, metaproteomics and proteomic SIP

2018-11-21 | PXD011737 | Pride

Multi-omics of the rhizosphere communities of Maize - Part 1

Project description:characterization of rhizosphere communities of maize with metagenomics, metaproteomics and proteomic SIP

2018-11-30 | PXD011891 | Pride

Multi-omics of the rhizosphere communities of wheat - Part 2

Project description:characterization of rhizosphere communities of wheat with metagenomics, metaproteomics and proteomic SIP

2018-11-30 | PXD011892 | Pride

Transcriptomic profiles of six strains of Lactococcus lactis in ultrafiltration-cheese model

Project description:The intra sub-species diversity of six strains of Lactococcus lactis subsp. lactis was investigated at the genomic level and in terms of phenotypic and transcriptomic profiles in UF-cheese model. Six strains were isolated from various sources, but all are exhibiting a dairy phenotype. Our results showed that, the six strains exhibited small phenotypic differences since similar behaviour in terms of growth was obtained during cheese ripening while only different acidification capability was detected. Even if all strains displayed high genomic similarities, sharing a high core genome of almost two thousands genes, the expression of this core genome directly in the cheese matrix revealed major strain-specific differences. This strains with the same dairy origin.

2012-09-07 | GSE23987 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data