Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Cappable-seq analysis of the Salmonella Typhimurium SL1344 transcriptome

ABSTRACT: Cappable-seq analysis of the Salmonella Typhimurium SL1344 transcriptome

PROVIDER: PRJEB58986 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Cappable-seq analysis of the Salmonella Typhimurium SL1344 transcriptome

Project description:Cappable-seq was used to map transcription start sites globally in Salmonella Typhimurium SL1344. In addition to naturally occurring plasmids pSLT and pCol1B9, the cells carry plasmid pAMNF. The latter can be used for low level constitutive expression of a transcription factor of interest, though in these experiments no such ectopic transcription factor expression was used.

2023-05-03 | E-MTAB-12506 | biostudies-arrayexpress

Cappable-seq analysis of the Salmonella Typhimurium SL1344 transcriptome with overexpression of MarA, SoxS, Rob or RamA

Project description:Cappable-seq was used to map transcription start sites globally in Salmonella Typhimurium SL1344. In addition to naturally occurring plasmids pSLT and pCol1B9, the cells carry derivatives of plasmid pAMNF, or pAMNM, that drive low level constitutive expression of epitope tagged MarA, SoxS, Rob or RamA derivatives.

2023-03-29 | E-MTAB-12628 | biostudies-arrayexpress

Salmonella Typhimurium SL1344 RiboPools/RiboZero comparison

Project description:Comparison of RiboPools and RiboZero rRNA depletion strategies in total RNA from Salmonella Typhimurium, strain SL1344

2019-12-10 | GSE132630 | GEO

Salmonella enterica serovar Typhimurium SL1344 cells: wildtype vs. ΔfabR mutant

Project description:Transcriptional profiling of Salmonella enterica serovar Typhimurium SL1344 cells comparing wildtype with ΔfabR mutant. Salmonella strains were cultured under free-living TSB conditions (TSB 1/20, 200 rpm, 25 °C) for 6h (ca. 2 x 108 cells/ml).

2014-12-31 | GSE52880 | GEO

ChIP-chip analysis of CspC binding in Salmonella enterica serovar Typhimurium strain SL1344

Project description:We performed Chromatin Immunoprecipitation (ChIP) and microarray hybridization analysis of CspC binding in Salmonella Typhimurium strain SL1344 which has been genetically engineered to express a 3xFLAG tagged CspC protein.

2015-02-26 | GSE66288 | GEO

Gene expression analysis of Salmonella enterica serovar Typhimurium strain SL1344 swap

Project description:We performed transcriptome abundance analysis of Salmonella Typhimurium strain SL1344 swap which has been genetically engineered to express the hns open-reading frame from the stpA promoter and the stpA open reading frame from the hns promoter. This strain is designated SL1344(swap). Transcript abundance was compared with that of wild-type SL1344. This comparison was performed to determine the effect of chromosome location of the expression of two related global regulators and how alterations to their expression patterns would impact on their regulons.

2013-11-09 | GSE52235 | GEO

FabR ChIP-chip on Salmonella enterica subsp. enterica serovar Typhimurium SL1344

Project description:FabR ChIP-chip on Salmonella enterica subsp. enterica serovar Typhimurium SL1344 using anti-Myc antibody against strain with chromosomally 9Myc-tagged FabR (IP samples) and wildtype strain (mock IP samples)

2014-12-31 | GSE52877 | GEO

Transcription profiling of Salmonella enterica serovar Typhimurium SL1344 and a SL1344 ramA gene knockout

Project description:The transcriptomes of Salmonella enterica serovar Typhimurium SL1344 and SL1344 lacking a functional ramA were compared

2009-12-31 | E-MEXP-2193 | biostudies-arrayexpress

Transcription profiling by array of Salmonella enterica serovar Typhimurium SL1344 and a SL1344 soxS knockout

Project description:The transcriptome of Salmonella enterica serovar Typhimurium SL1344 was compared to that of SL1344 with soxS knocked out.

2010-12-01 | E-MEXP-2888 | biostudies-arrayexpress

Comparison of Salmonella enterica serovar Typhimurium SL1344 and a SL1344 acrF gene knockout

Project description:The transcriptomes of Salmonella enterica serovar Typhimurium SL1344 and an isogenic acrF::aph mutant were compared.

2011-06-01 | E-MEXP-2976 | biostudies-arrayexpress