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RNA-seq of Globodera rostochiensis: Ro5-line-22

ABSTRACT: RNA-seq of Globodera rostochiensis: Ro5-line-22

PROVIDER: PRJEB66473 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR12083061_1.fastq.gz	Fastqsanger.gz
	ERR12083061_2.fastq.gz	Fastqsanger.gz

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RNA-seq of Globodera rostochiensis: Ro5-line-22

Project description:TRD hatched preparasitc juveniles of line-22 from Globodera rostochiensis were collected and total RNA was isolated as described under ”Materials and methods” in the manuscript. Library prep was conducted using a ribosome depletion method. The same protocols and methods applies to Ro1-line19: SRR16693885

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Project description:TaxonomyPhylum Nematoda; class Chromadorea; order Rhabditida; suborder Tylenchina; infraorder Tylenchomorpha; superfamily Tylenchoidea; family Heteroderidae; subfamily Heteroderinae; Genus Globodera.BiologyPotato cyst nematodes (PCN) are biotrophic, sedentary endoparasitic nematodes. Invasive (second) stage juveniles (J2) hatch from eggs in response to the presence of host root exudates and subsequently locate and invade the host. The nematodes induce the formation of a large, multinucleate syncytium in host roots, formed by fusion of up to 300 root cell protoplasts. The nematodes rely on this single syncytium for the nutrients required to develop through a further three moults to the adult male or female stage. This extended period of biotrophy-between 4 and 6 weeks in total-is almost unparalleled in plant-pathogen interactions. Females remain at the root while adult males revert to the vermiform body plan of the J2 and leave the root to locate and fertilize the female nematodes. The female body forms a cyst that contains the next generation of eggs.Host rangeThe host range of PCN is limited to plants of the Solanaceae family. While the most economically important hosts are potato (Solanum tuberosum), tomato (Solanum lycopersicum), and aubergine (Solanum melongena), over 170 species of Solanaceae are thought to be potential hosts for PCN (Sullivan et al., 2007).Disease symptomsSymptoms are similar to those associated with nutrient deficiency, such as stunted growth, yellowing of leaves and reduced yields. This absence of specific symptoms reduces awareness of the disease among growers.Disease controlResistance genes (where available in suitable cultivars), application of nematicides, crop rotation. Great effort is put into reducing the spread of PCN through quarantine measures and use of certified seed stocks.Useful websitesGenomic information for PCN is accessible through WormBase ParaSite.

| S-EPMC8035638 | biostudies-literature

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