Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Evolutionary history of field voles

ABSTRACT: Evolutionary history of field voles

PROVIDER: PRJEB67915 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR12397500.fastq.gz	Fastqsanger.gz
	ERR12397500_1.fastq.gz	Fastqsanger.gz
	ERR12397500_2.fastq.gz	Fastqsanger.gz
	ERR12397600.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 646

Similar Datasets

Evolutionary history of Bunias orientalis

Project description:Evolutionary history of Bunias orientalis

| PRJEB22721 | ENA

voles

Project description:voles Raw sequence reads

| PRJNA675310 | ENA

Evolutionary history of Microtus obscurus reconstructed using modern and ancient genomes

Project description:Evolutionary history of Altai vole

| PRJEB73877 | ENA

Methylation studies in prairie voles

Project description:An Infinium microarray platform (GPL28271, HorvathMammalMethylChip40) was used to generate DNA methylation data from several tissues from prairie voles (Microtus ochrogaster). Ear, liver, and brain samples from the Cornell University prairie vole colony were collected from 48 male and female prairie voles at various life stages: neonatal (<1 month old), sub-adult (2-4 months old), mature adult (4-10 months old), and middle aged/old adult (>10 months old). The pair bonded male and female prairie voles used in our study cohabitated with their partners for several months and produced at least three generations of litters. Animals were euthanized via rapid decapitation, their tissues rapidly extracted and frozen on dry ice before being stored at -80C until further processing for genomic DNA extraction. Brains were coronally sectioned and brain regions from the pair bonding circuit (PBC) were micro-dissected and pooled for each animal. The PBC brain regions included the prefrontal cortex, nucleus accumbens, lateral septum, ventral pallidum, and medial amygdala, and ventral tegmental area. Genomic DNA was isolated and purified using the phenol-chloroform extraction and ethanol precipitation method. A total of 144 tissue samples were collected and processed for DNA methylation analysis. Tissues: Brain, Ear, Liver

2023-08-07 | GSE174758 | GEO

Wild field vole expression

Project description:RNAseq analysis of field voles (Microtus agrestis)

| PRJEB51626 | ENA

The Evolutionary History of Alba

Project description:A study looking at the genetic basis and evolutionary history of the female limited alternative life-history strategy, ALba, found in the butterfly genus Colias.

| PRJEB43860 | ENA

A quantitative model for characterizing the evolutionary history of mammalian gene expression

Project description:Characterizing the evolutionary history of a gene’s expression profile is a critical component for understanding the relationship between genotype, expression, and phenotype. However, it is not well-established how best to distinguish the different evolutionary forces acting on gene expression. Here, we use RNA-seq across 7 tissues from 17 mammalian species to show that expression evolution across mammals is accurately modeled by the Ornstein-Uhlenbeck (OU) process. This stochastic process models expression trajectories across time as Gaussian distributions whose variance is parameterized by the rate of genetic drift and strength of stabilizing selection. We use these mathematical properties to identify expression pathways under neutral, stabilizing, and directional selection, quantify the extent of selective pressure on a gene’s expression, and detect deleterious expression levels outside expected evolutionary distributions in single patients. Our work provides a statistical framework for interpreting expression data across species and in disease.

2018-10-21 | GSE106077 | GEO

Evolutionary History of Tibetans Inferred from Whole-Genome Sequencing

Project description:Evolutionary History of Tibetans Inferred from Whole-Genome Sequencing

| PRJNA380443 | ENA

The evolutionary history of the European wildcat, Felis silvestris silvestris

Project description:The evolutionary history of the European wildcat, Felis silvestris silvestris

| PRJEB27298 | ENA

Methylation studies in prairie voles

Project description:Methylation studies in prairie voles

| PRJNA731480 | ENA