Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Whole Genome Sequencing versus Traditional Genotyping

ABSTRACT: WGS versus Traditional Genotyping for Investigation of a M. tuberculosis Outbreak in Hamburg

PROVIDER: PRJEB6945 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR550641_1.fastq.gz	Fastqsanger.gz
	ERR550641_2.fastq.gz	Fastqsanger.gz
	ERR550671_1.fastq.gz	Fastqsanger.gz
	ERR550671_2.fastq.gz	Fastqsanger.gz
	ERR550691_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 156

Similar Datasets

High concordance between SNPs identified by the porcine 60K BeadChip genotyping array (Illumina) and the assembly-versus-assembly method

2016-07-05 | GSE83910 | GEO

Project description:VREfm Nosocomial Outbreak WGS Investigation

| PRJNA997588 | ENA

Traditional pickles

Project description:Traditional Pickles Metagenome

| PRJNA854276 | ENA

High concordance between SNPs identified by the porcine 60K BeadChip genotyping array (Illumina) and the assembly-versus-assembly method

Project description:Porcine 60K BeadChip genotyping arrays (Illumina) are increasingly being applied in pig genomics to validate SNPs identified by re-sequencing or assembly-versus-assembly method. Here we report that more than 98% SNPs identified from the porcine 60K BeadChip genotyping array (Illumina) were consistent with the SNPs identified from the assembly-based method. This result demonstrates that whole-genome de novo assembly is a reliable approach to deriving accurate maps of SNPs. To compare SNPs identified by genotyping arrays and de novo assembly method, we genotyped 10 pig breeds by porcine 60K BeadChip genotyping array (Illumina), including 1 berkshire pig, 1 hampshire pig, 1 landrace pig, 1 large white pig,1 piÃ©train pig, 1 bamei pig,1 jinhua pig, 1 meishan pig, 1 rongchang pig and 1 Tibetan wild boar.

2016-07-05 | E-GEOD-83910 | biostudies-arrayexpress

Genotyping in Neuroblastoma Primary tumors

Project description:We performed genotyping of Neuroblastoma Primary tumors using Illumina HumanHap 550 - v1,v3,v3duo and 610 Quad genotyping beadchips.

2011-09-15 | GSE19385 | GEO

traditional chinese medicine

Project description:traditional chinese medicine Targeted loci

| PRJNA796441 | ENA

Project description:Added value of WGS in SFP outbreak investigation

| PRJNA750393 | ENA

Klebsiella pneumoniae

Project description:KPC-positive Klebsiella pneumoniae nosocomial outbreak WGS investigation

| PRJNA661102 | ENA

Genotyping human lymphoblastoid cell lines

Project description:Genotyping FATO and SATO3 human lymphoblastoid cell lines

2010-08-27 | GSE23813 | GEO