Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

PiPlaSpeb

ABSTRACT: Plagiopyla sp. strain JUDRED, genomic and transcriptomic data

PROVIDER: PRJEB69482 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR12303924.fastq.gz	Fastqsanger.gz
	ERR12318566_1.fastq.gz	Fastqsanger.gz
	ERR12318566_2.fastq.gz	Fastqsanger.gz
	ERR13493916_1.fastq.gz	Fastqsanger.gz
	ERR13493916_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

piPlaSpea

Project description:Plagiopyla sp. strain OYSTR, genomic and transcriptomic data

| PRJEB65643 | ENA

piPlaSpec

Project description:Plagiopyla sp. strain F1A, genomic and transcriptomic data

| PRJEB65645 | ENA

piPlaFron

Project description:Plagiopyla frontata, genomic and transcriptomic data

| PRJEB65641 | ENA

piPlaSpeb

Project description:Plagiopyla sp. strain JUDRED

| PRJEB69483 | ENA

piPlaSpea

Project description:Plagiopyla sp. strain OYSTR

| PRJEB65644 | ENA

piPlaSpec

Project description:Plagiopyla sp. strain F1A

| PRJEB65646 | ENA

Plagiopyla

Project description:Plagiopyla sp. overview

| PRJNA1012094 | ENA

Polyomic elucidation of the 9,10-anthraquinone biodegradation pathway by a newly isolated oxy-PAH degrading specialist from PAH-contaminated soil

Project description:We report the isolation of the first bacterial strain, Sphingobium sp. AntQ-1, with the ability to grow on the oxy-PAH anthraquinone as sole carbon and energy source. We combine genomic, transcriptomic and metabolomic analysis to comprehensively elucidate the anthraquinone metabolic pathway and to identify key degradative genes.

2023-01-24 | GSE199781 | GEO

Analysis of differential gene expression in the degradation of doxycycline by Chryseobacterium sp. WX1

Project description:We isolated an efficient doxycycline degrading strain Chryseobacterium sp. WX1. To investigate gene expression patterns during doxycyclinedegradation by strain WX1, we conducted a comparative transcriptomic analysis using cultures of strain WX1 with and without doxycycline addition. The RNA-Seq data revealed that 90.44-96.56% of the reads mapped to the genome of Chryseobacterium sp. WX1 across all samples. Differentially expressed genes (DEGs) analysis (|log2FC| >2; p < 0.01) showed that 693 genes were significantly up-regulated and 592 genes were significantly down-regulated.

2023-09-12 | GSE242785 | GEO

Analysis of differential gene expression in the degradation of tetracycline by Sphingobacterium sp. WM1

Project description:We isolated an efficient tetracycline degrading strain Sphingobacterium sp. WM1. To investigate gene expression patterns during tetracycline degradation by strain WM1, we conducted a comparative transcriptomic analysis using cultures of strain WM1 with and without tetracycline addition. The RNA-Seq data revealed that 90.44-96.56% of the reads mapped to the genome of Sphingobacterium sp. WM1 across all samples. Differentially expressed genes (DEGs) analysis (|log2FC| >2; p < 0.01) showed that 693 genes were significantly up-regulated and 592 genes were significantly down-regulated.

2023-09-21 | GSE234909 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data