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DdHypHirs

ABSTRACT: Hypericum hirsutum

PROVIDER: PRJEB73431 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
		Other
	ERR12721075.fastq.gz	Fastqsanger.gz
	ERR12723490_1.fastq.gz	Fastqsanger.gz
	ERR12723490_2.fastq.gz	Fastqsanger.gz

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Hypericum hirsutum

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ddHypHirs1 hap1

Project description:Hypericum hirsutum genome assembly, ddHypHirs1 haplotype 1

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Project description:Hypericum hirsutum genome assembly, ddHypHirs1 haplotype 2

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Expression data from LPS-stimulated RAW 264.7 mouse macrophages treated with Hypericum perforatum fraction and bioactive constituents

Project description:Hypericum perforatum extracts have been used as dietary supplements to treat conditions including mild-moderate depression and inflammation. A group of four bioactive constituents were identified from an active fraction of the extract. In order to identify the mechanism for the potential anti-inflammatory activity of the identified compounds, we used Affymatrix microarray to study the gene expression profile impacteded by these compounds, as well as the active fraction in LPS-stimulated mouse macrophages. We treated RAW264.7 mouse macrophages with DMSO control, active fraction from Hypericum perforaum extract, and a combination of the 4 putative bioactive compounds, called the 4-component system, all with and without LPS induction. A total of six treatment combinations were included in the final gene expression analysis using microarray.

2010-05-28 | E-GEOD-21841 | biostudies-arrayexpress

ddHypAndr

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A genome-wide analysis of expression differences during fiber initiation between Gossypium hirsutum and Gossypium barbadense

Project description:We compared different days post-anthesis (5DPA, 10DPA, 15DPA and 25DPA) differentially expressed genes (DEGs) in fiber development between G. hirsutum and G. barbadense. In addition, we analysis the differentially expressed genes (DEGs) function using the database for annotation, visualization and integrated discovery (DAVID). Overall, gene expression pattern have significantly difference between G. hirsutum and G. barbadense. In this study, G. barbadense DEGS in different two DPA are significantly more than G. hirsutum. In addation, there are 18937 DEGs were identified in fruit development and postembryonic development pathways and only upregulated in G. barbadense only. Taken together, these findings suggest that there are considerable differences of gene expression between G. hirsutum and G. barbadense in cotton fiber development different stages.

2021-10-23 | GSE95146 | GEO

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