Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

16s Metagenomic Japan Nagoya

ABSTRACT: 16s rRNA reads generated from the rumen fluid of Japanese black cattle.

PROVIDER: PRJEB76958 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR13719300_1.fastq.gz	Fastqsanger.gz
	ERR13719300_2.fastq.gz	Fastqsanger.gz
	ERR13719301_1.fastq.gz	Fastqsanger.gz
	ERR13719301_2.fastq.gz	Fastqsanger.gz
	ERR13719302_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 64

Similar Datasets

Long-term high-grain diet altered the ruminal pH, fermentation, and epithelial transcriptomes, leading to restored oxidative phosphorylation in Japanese Black cattle

Project description:We explored the effect of long-term high-concentrate diet feeding on ruminal pH and fermentation, and its effect on the rumen epithelial transcriptomes in Japanese Black beef cattle during a 20-month fattening period.

2019-06-22 | GSE133152 | GEO

RNA-seq of longissimus dorsi muscles in Japanese black (Wagyu) and Chinese Red Steppes cattle

Project description:Comparative transcriptome profile of genes differentially expressed in longissimus dorsi muscles between Japanese black (Wagyu) and Chinese Red Steppes cattle by RNA-seq

2020-11-28 | GSE161967 | GEO

bovine gut metagenome

Project description:Rumen microbiota transfaunation in Japanese Black cattle

| PRJDB15687 | ENA

Expression data from muscle of vitamin A restricted steer.

Project description:Vitamin A (VA) restriction for beef cattle improves meat marbling. However, its molecular mechanisms are not completely elucidated. We performed microarray analysis to clarify effect of VA restriction on longissimus thoracis muscle gene expressions in Japanese Black steers.

2017-10-03 | GSE94886 | GEO

dairy cattle rumen 16S rRNA

Project description:dairy cattle rumen 16S rRNA Genome sequencing

| PRJNA883555 | ENA

Analysis of circulating microRNAs during early gestation in Japanese-Black cattle

Project description:We found four circulating miRNAs showing high levels in plasma of pregnant Japanese Black cows. Since these miRNAs are less affected by the measurement system due to hemolysis, it was suggested that they may be used as markers for early pregnancy diagnosis in cattle.

2021-06-26 | GSE178906 | GEO

Whole Genome Bisulfite Sequencing of Longissimus Dorsi Muscles between Japanese Black (Wagyu) and Chinese Red Steppes Cattle

Project description:We performed a comparative genome-wide methylation analysis of longissimus dorsi muscles between the Japanese Black (Wagyu) and Chinese Red Steppes cattle, which exhibit significant differences in meat quality traits. This will allow us to better understand the correlation between DNA methylation variants and meat quality traits.

2017-08-03 | GSE98818 | GEO

RNA-Seq data of ruminal epithelial tissue and 16S rRNA sequencing data of rumen digesta in goats infusion of three short-chain fatty acids [16s rRNA-seq]

Project description:Emerging data has highlighted the importance of short-chain fatty acids (SCFAs), particularly butyrate, in regulating ruminal homeostasis in vivo isolated epithelial cells. However, little is known about other SCFAs like acetate or propionate, and the interaction between rumen microbes and epithelial immunity are rarely reported. Here, we firstly combined infusion of three SCFAs, to study their different roles in ruminal development, antioxidant capacity, barrier functions, and immunity, as well as cross-talk with ruminal microbiome (16S rRNA sequencing data of rumen digesta) and derived transcriptome (RNA-Seq) and metabolism using an in vivo goat model.

2022-12-26 | GSE221508 | GEO

Difference in circulating microRNAs between grazing and grain-fed Japanese Black cattle

Project description:We aimed to elucidate the effects of feeding condition (indoor grain-feeding vs. grazing on pasture) on c-miRNAs in Japanese Black (JB) cattle (Wagyu). The cattle at 18 months old were divided into pasture feeding and conventional indoor grain feeding for 5 months. Microarray analysis of c-miRNAs from the plasma extracellular vesicles led to the detection of a total of 202 bovine miRNAs in the plasma, including 15 miRNAs that differed between the feeding conditions.

2017-02-09 | GSE81946 | GEO

bacterial protein function in rumen of heat-stressed beef cattle

Project description:Creatine pyruvate (CrPyr) is a new multifunctional nutrient that can provide both pyruvate and creatine. It has been shown to relieve the heat stress of beef cattle by improving antioxidant activity and rumen microbial protein synthesis, but the mechanism of CrPyr influencing rumen fermentation remains unclear. This study aimed to use metaproteomics technologies to investigate the bacterial protein function in rumen fluid samples taken from heat-stressed beef cattle treated with or without 60 g/d CrPyr.

2021-03-31 | PXD025118 |

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data