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DaSolNigr

ABSTRACT: Solanum nigrum (black nightshade)

PROVIDER: PRJEB78646 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
		Other
	ERR13474154_1.fastq.gz	Fastqsanger.gz
	ERR13474154_2.fastq.gz	Fastqsanger.gz
	ERR13485690.fastq.gz	Fastqsanger.gz

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daSolNigr

Project description:Solanum nigrum (black nightshade), genomic and transcriptomic data

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Project description:Solanum nigrum (black nightshade) genome assembly, daSolNigr1 haplotype 1

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PPH22 - various plant species in negative ionisation mode

Project description:MS2 spectra of Capsicum annuum; Cucurbita pepo; Cucumis sativus; Datura stramonium; Petunia axillaris; Petunia exserta; Pisum sativum; Solanum arcanum; Solanum chilense; Solanum dulcamara; Solanum habrochaites; Solanum lycopersicum; Solanum nigrum; Solanum pennelli; Solanum peruvianum; Solanum pimpinellifolium; Solanum tuberosum; Trifolium pratense; Withania somnifera obtained via liquid chromatograohy / Q exactive mass spectrometry in positive ionisation mode.

2023-01-10 | MSV000091039 | MassIVE

PPH22 - various plant species in positive ionisation mode

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Solanum nigrum

Project description:Solanum nigrum overview

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Project description:Solanum nigrum genome

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Herbivore-induced vaccination of N. attenuata and S. nigrum

Project description:Nicotiana attenuata and Solanum nigrum were challenged with different insects: Manduca sexta and Tupiocoris notatus in different combinations Goals of the study are first to haracterize the transcriptional response of two native Solanaceous plants (Nicotiana attenuata and Solanum nigrum) to attack from two herbivorous pests common on Solanaceous crops (Manduca sexta and Tupiocoris notatus). And second to identify genes involved in herbivore vaccination phenomenon. After germination, inbred and genetically characterized lines of N. attenuata DI92 and S. nigrum Sn30 originally collected from southwestern Utah in 1988, and Jena Germany in 2000, respectively, were grown in a greenhouse. Eggs of Manduca sexta (abbreviated M. s.) came from the North Carolina State University - Entomology Insectary and were hatched under 37°C. Nymphs and adults of Tupiocoris notatus (abbreviated T. n.) came from laboratory colonies started in 2000 with individuals collected from our Utah field sites. Plant were challenged with these different insect and combinations of them. All plants for a given treatment were enclosed in glass-and-mesh insect cages to avoid cross-infection. After 24 h or 5 days the herbivores and their frass were removed, and the above ground biomass of each plant was flash-frozen in liquid nitrogen and stored at -80 °C until RNA extraction. Three independent replicate cages (biological replicates) were used for each of the 7 treatments resulting in a total of 21 cages per species. RNA extraction was performed according to the protocol using Trizol. The RNA samples represent a pooled sample from 4 plants grown in a cage. Keywords: Direct comparison

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A brief description, to elaborate upon the brief label.

Project description:Solanum nigrum L. Transcriptome

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Solanum nigrum subsp. nigrum

Project description:Solanum nigrum subsp. nigrum Transcriptome or Gene expression

| PRJNA213801 | ENA