DaSolNigr1 hap1
Ontology highlight
ABSTRACT:
PROVIDER: PRJEB79341 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:Solanum nigrum (black nightshade) genome assembly, daSolNigr1 haplotype 2
| PRJEB79342 | ENA
Project description:Solanum nigrum (black nightshade), genomic and transcriptomic data
| PRJEB78645 | ENA
Project description:Siona lineata (black-veined moth) genome assembly, ilSioLine1 haplotype 1
| PRJEB80622 | ENA
Project description:MS2 spectra of Capsicum annuum; Cucurbita pepo; Cucumis sativus; Datura stramonium;
Petunia axillaris; Petunia exserta; Pisum sativum; Solanum arcanum;
Solanum chilense; Solanum dulcamara; Solanum habrochaites; Solanum lycopersicum;
Solanum nigrum; Solanum pennelli; Solanum peruvianum; Solanum pimpinellifolium; Solanum tuberosum; Trifolium pratense; Withania somnifera obtained via liquid chromatograohy / Q exactive mass spectrometry in positive ionisation mode.
2023-01-10 | MSV000091039 | MassIVE
Project description:MS2 spectra of Capsicum annuum; Cucurbita pepo; Cucumis sativus; Datura stramonium;
Petunia axillaris; Petunia exserta; Pisum sativum; Solanum arcanum;
Solanum chilense; Solanum dulcamara; Solanum habrochaites; Solanum lycopersicum;
Solanum nigrum; Solanum pennelli; Solanum peruvianum; Solanum pimpinellifolium; Solanum tuberosum; Trifolium pratense; Trifolium repens; Withania somnifera obtained via liquid chromatograohy / Q exactive mass spectrometry in positive ionisation mode.
2023-01-10 | MSV000091035 | MassIVE
Project description:Solanum lycopersicoides (LA2408), collected at higher altitudes (up to 3600 meters) than any of other solanum species, is a wild nightshade distant-allied to cultivated tomato. Many traits of Solanum lycopersicoides including cold tolerance, resistance to virus diseases and insect pests were previously confirmed. Thus, it is an ideal candidate plant for isolating cold-tolerance-related genes. In this study, we successfully cloned the full-length cDNA of the CBF1 gene from Solanum lycopersicoides which was designated as SsCBF1. In order to investigate the possible functions of SsCBF1 in plant growth and stress responses, we generated transgenic Arabidopsis overexpressing SsCBF1. We employed the RNA-seq approach to identify the differentially expressed genes between the two genotypes. Processing of RNA samples on the Illumina HiSeq 2000 system produced more than 20 million reads, each 100bp in length, encompassing 2.0 Gb of sequence data for each sample which was then mapped to the reference genome. The statistical analysis identified a total of 338 differentially expressed genes between Col-0 (WT) and transgenic Arabidopsis overexpressing SsCBF1 with the criteria of Q-value < 0.001 and fold change >2, among which 120 (35.5%) were up-regulated and 218 (64.5%) were down-regulated.
2013-09-01 | GSE40482 | GEO
Project description:Clossiana freija genome assembly, ilCloFrei2 haplotype 1
| PRJEB80772 | ENA