Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Coccomyxa elongate reference genome

ABSTRACT: Genome assembly and annotation of the terestrial microalgae Coccomyxa elongata SAG216-3B

PROVIDER: PRJEB79308 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
		Other
	ERR13611456.fastq.gz	Fastqsanger.gz
	ERR13611459_1.fastq.gz	Fastqsanger.gz
	ERR13611459_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Transcriptome analysis reveals global regulation in response to CO2 supplementation in oleaginous microalga Coccomyxa subellipsoidea C-169

Project description:The microalga Coccomyxa subellipsoidea C-169 possesses some features that may be valuable for lipid production, and, as demonstrated in this study, can be greatly induced to produce a high amount of fatty acid by CO2 supplementation. Here we have compared the transcriptome of air group (AG, cells cultured under 0.04% CO2) and CO2-supplemented group (CG, cells cultured under 2% CO2), and found that dramatic and collaborative regulation in central metabolic pathways as well as biochemical processes occured in response to CO2 supplementation. This study gains a broad understanding of how CO2 stress regulates gene expression and eventually reveals a fine-tuned strategy adopted by C-169 to sustain rapid cell growth and lipid production, which will be helpful for the implementation of biofuels production from oleaginous microalgae. Transcriptomic profiles of Coccomyxa subellipsoidea C-169 cultured for 4 days under two CO2 levels (0.04% and 2%, v/v) were generated by digital gene expression (DGE) analysis, in triplicate, using Illumina Hiseq2000.

2016-05-17 | E-GEOD-76638 | biostudies-arrayexpress

Coccomyxa

Project description:Coccomyxa sp. overview

| PRJNA281431 | ENA

Coccomyxa sp. LA000219

Project description:Coccomyxa sp. LA000219 Genome sequencing and assembly

| PRJNA269066 | ENA

Coccomyxa subellipsoidea

Project description:Coccomyxa subellipsoidea overview

| PRJNA321926 | ENA

Transcriptome analysis reveals global regulation in response to CO2 supplementation in oleaginous microalga Coccomyxa subellipsoidea C-169

2016-05-17 | GSE76638 | GEO

Genome wide RNA-Seq of CsubMADS1 OX and wildtype Coccomyxa subellipsoidea C-169 cultures

Project description:To assess the significant downstream pathways affected by the overexpression of CsubMADS1 in Coccomyxa, transcriptome analysis was carried out using RNA sequencing of three biological replicates each from WT and CsubMADS1 OX at stationary phase (3h before dark phase). The stationary phase was chosen for the analysis because this is when the nutrients start depleting in the medium and starvation stress is induced.

2023-10-01 | GSE214369 | GEO

Coccomyxa viridis

Project description:Coccomyxa viridis Raw sequence reads

| PRJNA1072845 | ENA

Coccomyxa sp. Obi

Project description:Coccomyxa sp. strain Obi

| PRJDB9433 | ENA

Coccomyxa subellipsoidea

Project description:Coccomyxa subellipsoidea Transcriptome or Gene expression

| PRJNA541798 | ENA

Coccomyxa sp. SUA001 isolate:SUA001

Project description:Coccomyxa sp. SUA001 isolate:SUA001 Genome sequencing and assembly