Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

DdEmpNigr

ABSTRACT: Empetrum nigrum, genomic and transcriptomic data

PROVIDER: PRJEB80049 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR13670035_1.fastq.gz	Fastqsanger.gz
	ERR13670035_2.fastq.gz	Fastqsanger.gz
	ERR13660072.fastq.gz	Fastqsanger.gz
	ERR13660073.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

daVerNigr

Project description:Verbascum nigrum, genomic and transcriptomic data

| PRJEB81034 | ENA

drRibNigr

Project description:Ribes nigrum, genomic and transcriptomic data

| PRJEB81058 | ENA

daSolNigr

Project description:Solanum nigrum (black nightshade), genomic and transcriptomic data

| PRJEB78645 | ENA

ilXesCnig

Project description:Xestia c-nigrum (setaceous Hebrew character), genomic and transcriptomic data

| PRJEB46287 | ENA

Gene expression in Drosophila treated with P. nigrum, pyrethrin or P. nigrum plus pyrethrin

Project description:The purpose of this experiment was to assess the effect of a synergistic combination of natural pyrethrin and an ethylacetate extract of Piper nigrum seeds (a botanical insecticide). This effect was compared to the effects of P. nigrum or pyrethrin used alone. Due to the synergistic nature of the mixture, it was predicted that gene expression profiles in this treatment would reflect this effect. Keywords: insecticide response, stress-response

2006-03-31 | GSE3035 | GEO

tfGorAlbo

Project description:Gordius_albopunctatus, genomic and transcriptomic data

| PRJEB78907 | ENA

Tropheryma whipplei proteome - Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme

Project description:Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme. Testing systematic exchanges of nucleotides over long stretches produces inversed RNA pieces (here named “swinger” RNA) differing from their template DNA. These may explain some trashed data. Here analyses of genomic, transcriptomic and proteomic data of the pathogenic Tropheryma whipplei according to canonical genomic, transcriptomic and translational 'rules' resulted in trashing 58.9% of DNA, 37.7% RNA and about 85% of mass spectra (corresponding to peptides). In the trash, we found numerous DNA/RNA fragments compatible with “swinger” polymerization. Genomic sequences covered by «swinger» DNA and RNA are 3X more frequent than expected by chance and explained 12.4 and 20.8% of the rejected DNA and RNA sequences, respectively. As for peptides, several match with “swinger” RNAs, including some chimera, translated from both regular, and «swinger» transcripts, notably for ribosomal RNAs. Congruence of DNA, RNA and peptides resulting from the same swinging process suggest that systematic nucleotide exchanges increase coding potential, and may add to evolutionary diversification of bacterial populations.

2017-12-18 | PXD006238 | Pride

Project description:The transcriptomic of Solanum nigrum to cadmium stress

| PRJNA1049911 | ENA

rHemHip

Project description:Hemorrhois hippocrepis, genomic and transcriptomic data.

| PRJEB77926 | ENA

idParAtra

Project description:Paraplatypeza atra, genomic and transcriptomic data

| PRJEB80193 | ENA