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CmMarPoly

ABSTRACT: Marchantia polymorpha (liverwort), genomic and transcriptomic data

PROVIDER: PRJEB80442 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	ERR13731927_1.fastq.gz	Fastqsanger.gz
	ERR13731927_2.fastq.gz	Fastqsanger.gz
	ERR13731928_1.fastq.gz	Fastqsanger.gz
	ERR13731928_2.fastq.gz	Fastqsanger.gz
	ERR13725969.fastq.gz	Fastqsanger.gz

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DE-ETIOLATED1 has a role in the circadian clock of the liverwort Marchantia polymorpha

Project description:Identification of genes with circadian rhythm in the liverwort Marchantia polymorpha subsp. ruderalis

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5-methyl cytosine profile of the wild type and Mpmet mutant in Marchantia polymorpha

Project description:To understand a role of MpMET in maintenance of cytpsine methylation and transposon silencing, we obtained a genome wide profile of 5-methylated cytosine from the Mpmet mutant of a model liverwort, Marchantia polymorpha.

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Conservation of antiviral defences in the non-vascular plant Marchantia polymorpha

Project description:Most of our current knowledge about the molecular events ruling plant-virus interaction come from studies focusing on vascular plants. We here characterized the molecular, cellular and physiological events goberning plant-virus interactions in the non-vascular liverwort Marchantia polymorpha.

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cmMarPoly

Project description:Marchantia polymorpha (liverwort)

| PRJEB80443 | ENA

Marchantia polymorpha subsp. ruderalis

Project description:Genomic and transcriptomic analyses of the liverwort Marchantia polymorpha

| PRJDB8530 | ENA

Proteomic response of the early divergent liverwort Marchantia polymorpha during infection with the oomycete pathogen Phytophthora palmivora

Project description:Here, we define the proteomic response of the early divergent liverwort Marchantia polymorpha during infection with the oomycete pathogen Phytophthora palmivora. We sampled whole liverwort thalli that were mock-inoculated (water) or infected with P. palmivora zoospores at 4 and 8 days post inoculation (dpi). This analysis revealed the protein profiles of liverworts during the biotrophic (4 dpi) and necrotrophic (8 dpi) stages of pathogen infection. In combination with additional omics datasets, our analyses reveal conserved aspects in the molecular response to pathogen infection in liverworts and angiosperms.

2019-06-24 | PXD012076 | Pride

High-light stress RNA-seq Marchantia polymorpha

Project description:In order to elucidate the role of the single Marchantia B-GATA ortholog in response to high light intensities, a transcriptomic analysis of Marchantia polymorpha BoGa, Mpb-gata1 mutants and MpB-GATA1ox under high-ligh stress conditions was performed.

2023-07-26 | GSE208562 | GEO

Project description:Liverwort (Marchantia polymorpha) epigenome and cistrome

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Transcriptome changes triggered by the loss of function of gene Mppcs in genome-edited Marchantia polymorpha plants

Project description:In the present study, Marchantia polymorpha Mppcs loss of function mutants were generated through CRISPR/cas9 mediated genome-editing. To assess whether the knockout of MpPCS gene affects the transcription of M. polymorpha nuclear genes in unstressed condition, the Mppcs-2 knockout mutant and Cam2 wild-type transcriptomes were compared by RNA-Seq.

2022-08-29 | E-MTAB-11885 | biostudies-arrayexpress

MiniTurbo-based interactomics of two plasma membrane-localized SNARE proteins in Marchantia polymorpha

Project description:• Marchantia polymorpha is a model liverwort and its overall low genetic redundancy is advantageous for dissecting complex pathways. Proximity-dependent in vivo biotin-labelling methods have emerged as powerful interactomics tools in recent years. However, interactomics studies applying proximity labelling are currently limited to angiosperm species in plants. • Here, we established and evaluated a miniTurbo-based interactomics method in M. polymorpha using MpSYP12A and MpSYP13B, two plasma membrane-localized SNARE proteins, as baits. • We show that our method yields a manifold of potential interactors of MpSYP12A and MpSYP13B compared to a co-immunoprecipitation approach. Our method could capture specific candidates for each SNARE. • We conclude that a miniTurbo-based method is a feasible tool for interactomics in M. polymorpha, potentially applicable to other model bryophytes. Our interactome dataset on MpSYP12A and MpSYP13B will be a useful resource to elucidate the evolution of SNARE functions.

2022-04-01 | PXD030429 | Pride

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