Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

On the origin of an insular hybrid butterfly lineage

ABSTRACT: On the origin of an insular hybrid butterfly lineage

PROVIDER: PRJEB81148 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR13793300_1.fastq.gz	Fastqsanger.gz
	ERR13793300_2.fastq.gz	Fastqsanger.gz
	ERR13793400_1.fastq.gz	Fastqsanger.gz
	ERR13793400_2.fastq.gz	Fastqsanger.gz
	ERR13793301_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 500

Similar Datasets

Single-cell transcriptomic analysis of dermal macrophage from PDGFRa-lineage origin under atopic dermatitis

Project description:We analyzed dermal macrophage repertoire derived from PDGFRa-lineage or non-PDGFRa-lineage origin in atopic dermatitis (AD) with single-cell RNA sequencing. PDGFRa-lineage tracing mice aged between 7- and 14-week old were used to label cells of PDGFRa-lineage with tdTomato. AD was induced by topic application of MC903 bidaily or tridaily to skin of female mice for six times. Inflamed skin was excised on day 14 and single cells were prepared. Target cells were sorted as single cells for sequencing. We identified multiple subtypes in both PDGFRa-lineage or non-PDGFRa-lineage macrophage and the proportion differed by PDGFRa-lineage origin in AD skin.

2022-07-27 | GSE166855 | GEO

Copy number variation in an invasive fish of hybrid origin

Project description:Copy number variation in an invasive fish of hybrid origin

| PRJNA359761 | ENA

Butterfly Genome Project

Project description:Butterfly Genome Project

| PRJNA714807 | ENA

A study on the origin of the mouse placental trophoblast lineage

Project description:A study on the origin of the mouse placental trophoblast lineage

| PRJNA552075 | ENA

Single-cell lineage tracing of metastatic cancer reveals selection of hybrid EMT states

Project description:The underpinnings of cancer metastasis remain poorly understood, in part due to a lack of tools for probing their emergence at high resolution. Here we present macsGESTALT, an inducible CRISPR-Cas9-based lineage recorder with highly efficient single-cell capture of both transcriptional and phylogenetic information. Applying macsGESTALT to a mouse model of metastatic pancreatic cancer, we recover ~380,000 CRISPR target sites and reconstruct dissemination of ~28,000 single cells across multiple metastatic sites. We find cells occupy a continuum of epithelial-to-mesenchymal transition (EMT) states. Metastatic potential peaks in rare, late-hybrid EMT states, which are aggressively selected from a predominately epithelial ancestral pool. The gene signatures of these late-hybrid EMT states are predictive of reduced survival in both human pancreatic and lung cancer patients, highlighting their relevance to clinical disease progression. Finally, we observe evidence for in vivo propagation of S100 family gene expression across clonally distinct metastatic subpopulations.

2021-06-09 | GSE173958 | GEO

Duplication and expression evolution of butterfly mouthparts genes associated with feeding

Project description:We sequenced the mRNA of three species of Heliconius butterfly and Eueides isabella in order to identify genes upregulated in the mouthparts tissues. Sequencing libraries were produced for three tissues types (mouthparts, legs and antennae), for one male and one female of each species.

2016-08-05 | E-MTAB-3446 | biostudies-arrayexpress

Clonal lineage tracing reveals shared origin of conventional and plasmacytoid dendritic cells

Project description:Clonal lineage tracing reveals shared origin of conventional and plasmacytoid dendritic cells

| PRJNA797427 | ENA

A distinct lineage of origin reveals heterogeneity of plasmacytoid dendritic cells I

Project description:A distinct lineage of origin reveals heterogeneity of plasmacytoid dendritic cells I

| PRJNA470936 | ENA

A distinct lineage of origin reveals heterogeneity of plasmacytoid dendritic cells III

Project description:A distinct lineage of origin reveals heterogeneity of plasmacytoid dendritic cells III

| PRJNA470939 | ENA

Dispersal, flight metabolism and gene expression in the Glanville fritillary butterfly

Project description:We have measured flight effect in gene expression using individual-based RNA-seq data from two regional populations of the Glanville fritillary butterfly (Melitaea cinxia). Largest number of differentially expressed genes were between populations (3840 genes) and between males and females (1622 genes). 801 genes had significant flight effect. Enriched GO and KEGG categories among these genes included hypoxia, glycolysis, and TCA cycle.

2015-06-01 | GSE47942 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data