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DrUlmMino

ABSTRACT: Ulmus minor (field elm)

PROVIDER: PRJEB81850 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR13925936_1.fastq.gz	Fastqsanger.gz
	ERR13925936_2.fastq.gz	Fastqsanger.gz
	ERR13917253.fastq.gz	Fastqsanger.gz

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drUlmMino

Project description:Ulmus minor (field elm), genomic and transcriptomic data

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Equilibrium between anatomical structures and molecular responses underlie differential strategies to face Ophiostoma novo-ulmi in two tolerant Iberian elm genotypes

Project description:Five years old Ulmus minor plants from three different genotypes, two tolerant and one sensitive to Dutch Elm disease, were inoculated with an aggressive local strain of Ophiostoma novo-ulmi (Z-BU1) while the other half were inoculated with sterile and distilled water as control treatment. following the procedure described by Solla et al. (2005). A healthy 3-year-old branch located around 2 meters tall, from both inoculated and control plants, were collected at 1, 3, 7, 14 and 21 days after inoculation. The stem from the branch was individualized and RNA isolated to hybridize two colors microarrays.

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Project description:6-year-old ramets of U. minor (Atinian elm clone) were inoculated with O. novo-ulmi in order to evaluate molecular responses activated during plant colonization. To elucidate the different genes involved in the U. minor immune system and the molecular changes suffered after inoculation, oligomicroarrays were constructed using the data from the transcriptome available in the Dryad database (Perdiguero et al., 2015; http://dx.doi.org/10.5061/dryad.ps837), and hybridized with cDNA obtained from the ramets over a time course following inoculation. Three biological replicates for control and inoculated plants for each sampling point (1, 3, 7, 14 and 21 days post-inoculation) were hybridised using two colors (inoculated vs control).

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Project description:In this study we applied RNA-sequencing to a set of larvae-challenged elm trees that had either been untreated before or been exposed to prior egg deposition by elm leaf beetles. This dataset allowed us to characterize the global transcriptional response of egg-primed and non-primed elm trees at different time points after the priming stimulus itself and after the onset of larval feeding.

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