Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

SMiLE-seq sequencing data (illumina) of human transcription factors profiled in the Codebook/GRECO-BiT collaboration

ABSTRACT: SMiLE-seq sequencing data (illumina) of human transcription factors profiled in the Codebook/GRECO-BiT collaboration

PROVIDER: PRJEB82318 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR13934300.fastq.gz	Fastqsanger.gz
	ERR13934400.fastq.gz	Fastqsanger.gz
	ERR13934500.fastq.gz	Fastqsanger.gz
	ERR13934600.fastq.gz	Fastqsanger.gz
	ERR13934700.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 495

Similar Datasets

SMiLE-seq sequencing data (illumina) of human transcription factors profiled in the Codebook/GRECO-BiT collaboration

Project description:We assayed 284 human transcription factors (TFs) for DNA binding using selective microfluidics-based ligand enrichment followed by sequencing (SMiLE-seq). These experiments were part of the Codebook/GRECO-BiT collaboration aiming to identify the DNA binding sites of yet-uncharacterized TFs. All data has already been demultiplexed and associated with the corresponding TFs.

2024-11-11 | E-MTAB-14598 | biostudies-arrayexpress

Methylation-sensitive SMiLE-seq sequencing data (illumina) of human transcription factors profiled in the Codebook/GRECO-BiT collaboration

Project description:Methylation-sensitive SMiLE-seq sequencing data (illumina) of human transcription factors profiled in the Codebook/GRECO-BiT collaboration

| PRJEB82356 | ENA

Methylation-sensitive SMiLE-seq sequencing data (illumina) of human transcription factors profiled in the Codebook/GRECO-BiT collaboration

Project description:We assayed 114 human transcription factors (TFs) for DNA binding using methylation-sensitive selective microfluidics-based ligand enrichment followed by sequencing (meSMiLE-seq). Across 23 experiments, we identified DNA binding sites for 48 TFs. Among these, 13 showed aversion towards methylated DNA, while 11 exhibited either a preference for methylated DNA or an alternative binding site including the modification. The DNA binding for the remaining TFs was unaffected by DNA methylation under the conditions of the assay.

2024-11-11 | E-MTAB-14597 | biostudies-arrayexpress

Enterobacteriaceae bacterium BIT-l23

Project description:Enterobacteriaceae bacterium BIT-l23 Genome sequencing and assembly

| PRJNA635003 | ENA

ARRA Autism Sequencing Collaboration

Project description:ARRA Autism Sequencing Collaboration

| PRJNA74861 | ENA

Mixta tenebrionis strain:BIT-26

Project description:Mixta tenebrionis strain:BIT-26 Genome sequencing and assembly

| PRJNA550228 | ENA

Tenebrionibacter intestinalis strain:BIT-L3

Project description:Tenebrionibacter intestinalis strain:BIT-L3 Genome sequencing and assembly