Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Assembly of genomes of Actinidia genus

PROVIDER: PRJNA1011506 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26124522_1.fastq.gz	Fastqsanger.gz
	SRR26124522_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Project description:Malus genus genomes

| PRJNA1062995 | ENA

Actinidia

Project description:Reticulate evolution in the genus Actinidia Raw sequence reads

| PRJNA318567 | ENA

Transcriptome profile in RAW264.7 cells in response to the polysaccharide from the roots of Actinidia eriantha (AEPS)

Project description:Recent studies have reported the activation of macrophages by the polysaccharide from the roots of Actinidia eriantha (AEPS). This study aims to explore the potential role of mRNAs and lncRNAs in AEPS-activated macrophages.

2018-10-05 | GSE120832 | GEO

Xenopus andrei RNA-Seq

Project description:The Xenopus genus is well known for the high degree of polyploidy observed in its constituent species, but there is minimal information about transcriptional changes observed in these highly polyploid vertebrates. Xenopus andrei, an octoploid species within the Xenopus genus, presents a novel system for assessing a polyploid transcriptome during vertebrate development. RNA-Seq data was generated at nine different developmental stages ranging from unfertilized eggs through late tailbud stages. Additionally, using Trinity, RNA-seq data from all nine stages was pooled to create a draft de novo assembly of the transcriptome. This represents the first published assembly of an octoploid vertebrate transcriptome. This RNA-Seq and transcriptome data will be useful in comparing polyploid transcriptomes across Xenopus species, as well as understanding evolutionary implications of whole-genome duplication in vertebrates.

2018-03-10 | GSE111639 | GEO

ChIP-seq analysis with an antibody directed against the human H3K27ac protein in Raji cells (Genbank: KF717093.1) prior to and post induction of BZLF1.

Project description:ChIP peaks were identified in both the human and viral genomes (genome assembly GRCh37 (hg19) and Epstein-Barr virus, Human Herpesvirus 4; GenBank accession KF717093.1).

2021-06-22 | E-MTAB-8421 | biostudies-arrayexpress

Transcriptome sequencing of parasitoid wasp Muscidifurax zaraptor and its Nosema parasite

Project description:Nosema is a diverse fungal genus of microsporidian unicellular, obligate symbionts of insects and other arthropods. We performed a comparative genomic analysis of N. muscidifuracis, a Nosema species infecting parasitoid wasp genus Muscidifurax, with six other genome-sequenced Nosema species. A sequence motif containing at least three consecutive Cs was significantly enriched immediately upstream of the start codon in all seven Nosema genomes. Interestingly, this motif is present in ~90% of highly expressed genes, compared to ~20% in lowly expressed genes N. muscidifuracis, which may function as a cis-regulatory element for gene expression control and regulation. Our study provides new insights into the gene regulation evolution in Nosema.

2023-11-26 | GSE248484 | GEO

Project description:Organelle genomes of species of genus Rhizosolenia

| PRJNA686853 | ENA

Project description:Organelle genomes of species of genus Thalassiosira

| PRJNA684688 | ENA

Project description:Evolution of genomes in the genus Rosa

| PRJNA454073 | ENA

Project description:Chloroplast genomes of Heterotropa (genus Asarum Aristolochiaceae)

| PRJDB9302 | ENA