Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

CycloN RNA sequencing data

ABSTRACT: CycloN RNA sequencing data - Raw sequence reads

PROVIDER: PRJNA1045471 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR26977100_1.fastq.gz	Fastqsanger.gz
	SRR26977100_2.fastq.gz	Fastqsanger.gz
	SRR26977101_1.fastq.gz	Fastqsanger.gz
	SRR26977101_2.fastq.gz	Fastqsanger.gz
	SRR26977102_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 250

Similar Datasets

Sequencing data

Project description:Sequencing data Raw sequence reads

| PRJNA946334 | ENA

16S RNA sequencing data of silage

Project description:16S RNA sequencing data of silage Raw sequence reads

| PRJNA818120 | ENA

Sequencing of siRNA from soybean containing silencing vectors and empty vectors

Project description:A cDNA library was constructed by Novogene (CA, USA) using a Small RNA Sample Pre Kit, and Illumina sequencing was conducted according to company workflow, using 20 million reads. Raw data were filtered for quality as determined by reads with a quality score > 5, reads containing N < 10%, no 5' primer contaminants, and reads with a 3' primer and insert tag. The 3' primer sequence was trimmed and reads with a poly A/T/G/C were removed

2021-07-21 | GSE180131 | GEO

Tvarminne EL22 cruise sediment RNA sequencing data

Project description:Tvarminne EL22 cruise sediment RNA sequencing data - Raw sequence reads

| PRJNA1005461 | ENA

Stallion sperm transcriptome as revealed by microarray analysis and RNA sequencing

Project description:Purpose: In order to understand the functional significance of sperm transcriptome in stallion fertility, the aim of this study was to generate a detailed body of knowledge about the sperm RNA profile that defines a normal fertile stallion. Methods: The 50 bp single-end ABI SOLiD raw reads were directly aligned with the horse reference sequence EcuCab2 using ABI aligner software (NovoalignCS version 1.00.09, novocraft.com) which uses multiple indexes in the reference genome, identifies candidate alignment locations for each primary read, and allows completion of the alignment. Results: Next generation sequencing (NGS) of total RNA from the sperm of two reproductively normal stallions generated about 70 million raw reads and more than 3 Gb of sequence per sample; over half of these aligned with the EcuCab2 reference genome. Altogether, 19,257 sequence tags with average coverage ?1 (normalized number of transcripts) were mapped in the horse genome. Conclusion: The sequence of stallion sperm transcriptome is an important foundation for the discovery of transcripts of known and novel genes, and non-coding RNAs, thus improving the annotation of the horse genome sequence draft and providing markers for evaluating stallion fertility. Reproductively fertile Stallion sperm transcriptome as revealed by RNA sequencing

2013-02-19 | E-GEOD-38725 | biostudies-arrayexpress