Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Analysis of local and systemic wound response in Marchantia polymorpha

ABSTRACT: Analysis of local and systemic wound response in Marchantia polymorpha

PROVIDER: PRJNA1053403 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Analysis of local and systemic wound response in Marchantia polymorpha

Project description:Transcriptional profiling of Marchantia polymorpha Takaragaike-1 wild-type genotype, in samples from intact plants (NW, non-wounded) and from wounded plants, both in locally damaged tissue (W, wounded) and in systemic non-wounded tissues of the damaged plants (SD, systemic tissues of damaged plants)

2024-04-22 | GSE250354 | GEO

High-light stress RNA-seq Marchantia polymorpha

Project description:In order to elucidate the role of the single Marchantia B-GATA ortholog in response to high light intensities, a transcriptomic analysis of Marchantia polymorpha BoGa, Mpb-gata1 mutants and MpB-GATA1ox under high-ligh stress conditions was performed.

2023-07-26 | GSE208562 | GEO

Transcriptome changes triggered by the loss of function of gene Mppcs in genome-edited Marchantia polymorpha plants

Project description:In the present study, Marchantia polymorpha Mppcs loss of function mutants were generated through CRISPR/cas9 mediated genome-editing. To assess whether the knockout of MpPCS gene affects the transcription of M. polymorpha nuclear genes in unstressed condition, the Mppcs-2 knockout mutant and Cam2 wild-type transcriptomes were compared by RNA-Seq.

2022-08-29 | E-MTAB-11885 | biostudies-arrayexpress

DE-ETIOLATED1 has a role in the circadian clock of the liverwort Marchantia polymorpha

Project description:Identification of genes with circadian rhythm in the liverwort Marchantia polymorpha subsp. ruderalis

2021-07-21 | GSE180340 | GEO

Conservation of antiviral defences in the non-vascular plant Marchantia polymorpha

Project description:Most of our current knowledge about the molecular events ruling plant-virus interaction come from studies focusing on vascular plants. We here characterized the molecular, cellular and physiological events goberning plant-virus interactions in the non-vascular liverwort Marchantia polymorpha.

2024-08-16 | GSE241827 | GEO

The wound activated ERF15 transcription factor drives Marchantia polymorpha regeneration by activating an oxylipin biosynthesis feedback loop

Project description:The regenerative potential in response to wounding varies largely along species. Within the plant lineage, the liverwort Marchantia polymorpha displays an extraordinary regeneration capacity. However, its molecular pathways controlling the initial regeneration response post wounding is currently unknown. In Arabidopsis, the transcription factor ETHYLENE RESPONSE FACTOR 109 (ERF109) plays an essential role in tissue regeneration. Here, we demonstrate that the Marchantia MpERF15 transcription factor gene represents a functional ortholog of ERF109, being instantly activated following wounding and being essential for gemmaling regeneration following tissue incision. MpERF15 is a downstream target of the MpCOI1 oxylipin receptor, but differently from Arabidopsis ERF109 its wound responsiveness is COI1 independent. At the other hand, and again differently from ERF109, MpERF15 drives oxylipin biosynthesis by controlling the upstream MpAOS2 and MpAOC biosynthesis genes. The resulting rise in the oxylipin dnOPDA levels results in an increase in gemma cell number and apical notch organogenesis, giving rise to highly disorganized and compact thalli. Our data pinpoint MpERF15 as a key factor activating an oxylipin biosynthesis amplification loop following wounding that eventually results in re-activation of cell division and regeneration, and suggest that the genetic networks controlling oxylipin biosynthesis in response to wounding might have been reshuffled over evolution.

2022-02-19 | GSE196912 | GEO

5-methyl cytosine profile of the wild type and Mpmet mutant in Marchantia polymorpha

Project description:To understand a role of MpMET in maintenance of cytpsine methylation and transposon silencing, we obtained a genome wide profile of 5-methylated cytosine from the Mpmet mutant of a model liverwort, Marchantia polymorpha.

2023-09-21 | GSE234851 | GEO

Marchantia polymorpha

Project description:Marchantia polymorpha virus research

| PRJNA1022866 | ENA

Marchantia polymorpha

Project description:Marchantia polymorpha metabolome analysis

| PRJDB14161 | ENA

Comparative transcriptomic analysis of Marchantia polymorpha BoGa and the MpB-GATA1 mutants Mpb-gata1-1 and Mpb-gata1-2

Project description:RNA-seq of Marchantia polymorpha Mpb-gata1 mutants was performed in order to investigate their molecular signature of gene expression changes.

2023-07-26 | GSE208557 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data