Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Goat liver single-cell RNA sequencing

ABSTRACT: Goat liver single-cell RNA sequencing

PROVIDER: PRJNA1054091 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27256519_1.fastq.gz	Fastqsanger.gz
	SRR27256519_2.fastq.gz	Fastqsanger.gz
	SRR27256520_1.fastq.gz	Fastqsanger.gz
	SRR27256520_2.fastq.gz	Fastqsanger.gz
	SRR27256521_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Goat liver single-cell RNA sequencing

Project description:The difference in liver cell types from healthy, non-alcoholic steatohepatitis (NASH) and non-alcoholic steatohepatitis tolerance goats.

2023-12-23 | GSE250454 | GEO

Single-cell RNA-seq of goat early embyos and GFFs cells

Project description:We use high-throughput single cell RNA-seq to determine expression profile of IVF-2cell 、 IVF-8cell and SCNT-8cell embryos,and C1 and over3720. At present, the strand-specific library could not be generated for the analysis of goat embryo lncRNA because of the lack of available specific rRNA removal kits for goats. In this study, single-cell RNA-seq technology was used to analyze early embryonic transcripts, enrich the involving transcripts, and construct an common transcript library. For identifying transcripts expressed during the early goat embryonic stage, three cDNA libraries were established from early goat embryos at the three developmental stages, namely, two-cell (IVF-2c)、 eight-cell embryos (IVF-8c) and somatic cell nuclear transfer（SCNT-8c). The GFFs cells transfected with control (no-load) and recombinant vectors were collected, total RNA was extracted, and the quality of the RNA was determined.

2022-04-04 | GSE199933 | GEO

Single-cell RNA sequencing of human liver cells

Project description:Single-cell RNA sequencing of human liver cells

| PRJEB48938 | ENA

Single-cell RNA sequencing analysis of humanized liver

Project description:Single-cell RNA sequencing analysis of humanized liver

| PRJNA982861 | ENA

A single-cell transcriptome atlas during Cashmere goat hair follicle morphogenesis

Project description:Cashmere, also known as soft gold, is produced from secondary hair follicles in Cashmere goats and it’s therefore of significance to investigate the molecular profiles during Cashmere goat hair follicle development. However, our current understanding of the machinery underlying Cashmere goat hair follicle remains largely unexplored and researches regarding hair follicle development mainly used the mouse as a research model. To provides comprehensively understanding on the cellular heterogeneity and cell lineage cell fate decisions, we performed single-cell RNA sequencing on 19,705 single cells from induction (embryonic day 60), organogenesis (embryonic day 90) and cytodifferentiation (embryonic day 120) stage fetus Cashmere goat dorsal skin. Unsupervised clustering analysis identified 16 cell clusters and their corresponding cell types were also successfully characterized. Based on cell lineage inference, we revealed detailed transcriptional gene expression profiles during dermal and epidermal lineage cell fate decisions. These works together delineate unparalleled molecular profiles of different cell populations during Cashmere goat hair follicle morphogenesis and provide a valuable resource for identifying biomarkers during Cashmere goat hair follicle development.

2020-10-18 | GSE144351 | GEO

small RNA sequencing of goat mamamary gland cells samples from cirRNA modification groups

Project description:The goat of this project is to explore cirRNA28250 efffect on small RNA to regulation goat mammary gland lipid metabolism. We tried to search the mechanism of cirRNA28250 regulation lipid metabolism through miRNA. small RNA seqencing of goat mamamary gland cells samples from different groups: 5NC, cirRNA28250 overexpression, 3NC,cirRNA28250 knockdown. The goat mammary gland cells were cultured in 3D condition. The cell were transfected with virus with cirRNA28250 gene (overexpression), or inhibition of cirRNA28250A expression (cirRNA28250 gene knockdown).

2021-12-01 | GSE142578 | GEO

small RNA sequencing of goat mamamary gland cells samples from different treatment groups

Project description:The goat of this project is to explore lncRNA55666 efffect on small RNA to regulation goat mammary gland lipid metabolism. We tried to search the mechanism of lncRNA55666 regulation lipid metabolism through miRNA. small RNA seqencing of goat mamamary gland cells samples from different groups: 5NC, lncRNA55666 overexpression, 3NC, lncRNA55666 knockdown. The goat mammary gland cells were cultured in 3D condition. The cell were transfected with virus with lncRNA55666 gene (overexpression), or inhibition of lncRNA expression (lncRNA gene knockdown).

2020-08-13 | GSE135793 | GEO

Single-cell RNA sequencing analysis of humanized liver

Project description:Single cell RNA sequencing of liver cells enriched for Non-Parenchymal cells (NPCs) to see the percentage of humanizaton, the gene signature and the heterogeneity of most types of human NPCs in a humanized liver.

2023-06-16 | GSE234758 | GEO

mRNA expression profile in the Laiwu black goat kid liver

Project description:Laiwu black goat kid liver mRNA expression profile were sequenced with novaSeq 6000. The liver tissues were procured at 5-time points from the Laiwu black goats of 1 day, 2 weeks, 4 weeks, 8 weeks, and 12 weeks of age, respectively with 5 goats per time point, for a total of 25 goats.

2022-01-28 | GSE194190 | GEO

Single-cell RNA-seq of goat early embyos and GFFs cells

Project description:Single-cell RNA-seq of goat early embyos and GFFs cells

| PRJNA822291 | ENA