Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pasteurella multocida strain:FCf147 | isolate:Cygnus melancoryphus

ABSTRACT: Pasteurella multocida strain:FCf147 | isolate:Cygnus melancoryphus Genome sequencing and assembly

PROVIDER: PRJNA1068204 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Comparison of the transcriptomes of a Pasteurella multocida VP161 wild-type strain with a Pasteurella multocida VP161 hfq mutant

2016-03-02 | GSE77721 | GEO

Comparison of the transcriptomes of a Pasteurella multocida VP161 wild-type strain with a Pasteurella multocida VP161 hfq mutant

Project description:Objectives: To determine the transcripts that are differentially expressed in a hfq mutant. Hfq is an RNA chaperone that mediates many interactions between regultory RNAs and their mRNA targets. Analysis of the transcriptomes of the Pasteurella multocida wild-type strain and the Pasteurella multocida hfq mutant will allow for identification of genes controlled by hfq and the sRNAs with which it interacts. Methods: RNA sequencing was employed to determine the transcriptomes of a wild-type Pasteurella multocida strain and a hfq mutant strain. Comparison of these two transcriptomes allows for determination of differentially expressed genes and therefore those genes controlled by Hfq and sRNAs with which it interacts.

2016-03-02 | E-GEOD-77721 | biostudies-arrayexpress

Pasteurella multocida Hfq mutant

Project description:Quantitative proteomics comparison wt and Hfq mutant Pasteurella multocida strains.

2016-03-14 | PXD003586 | Pride

Pasteurella multocida

Project description:Pasteurella multocida Assembly

| PRJNA531070 | ENA

Pasteurella multocida subsp. multocida strain:RCAD0276 | isolate:PMMY

Project description:Pasteurella multocida subsp. multocida strain:RCAD0276 | isolate:PMMY Genome sequencing and assembly

| PRJNA302563 | ENA

Pasteurella multocida subsp. multocida strain:HN141014 | isolate:PMHN

Project description:Pasteurella multocida subsp. multocida strain:HN141014 | isolate:PMHN Genome sequencing and assembly

| PRJNA303094 | ENA

Pasteurella multocida subsp. multocida strain:DY120818 | isolate:PM0818

Project description:Pasteurella multocida subsp. multocida strain:DY120818 | isolate:PM0818 Genome sequencing and assembly

| PRJNA303093 | ENA

The role of the RNA chaperone protein ProQ in Pasteurella multocida

Project description:The Gram-negative pathogen Pasteurella multocida is responsible for many important animal diseases. While a number of P. multocida virulence factors have been identified, very little is known about how gene expression and protein production is regulated in this organism. One mechanism by which bacteria regulate transcript abundance and protein production is riboregulation, which involves the interaction of a small RNA (sRNA) with a target mRNA to alter transcript stability and/or translational efficiency. This interaction often requires stabilization by a ribosome binding protein such as ProQ or Hfq. In E. coli and other species, ProQ has been shown to play a critical role in stabilizing sRNA-mRNA interactions and preferentially binds to 3’ stem-loop regions of the mRNA transcripts, characteristic of intrinsic transcriptional terminators. The aim of this study was to determine the role of ProQ riboregulation in P. multocida and identify the RNA regions to which it binds. We assessed differentially expressed transcripts in a proQ mutant and identified sites of direct ProQ-RNA interaction using in vivo UV-crosslinking and analysis of cDNA (CRAC). These analyses demonstrated that ProQ binds to, and stabilises, ProQ-dependant sRNAs and transfer RNAs in P. multocida via adenosine enriched, highly structured sequences. The binding of ProQ to two RNA molecules was characterised and showed that ProQ bound within the coding sequence of the uncharacterized PmVP161_1121 and within the 3’ region of the sRNA Prrc13.

2022-03-02 | GSE196834 | GEO

Pasteurella multocida strain:HS_Canada1 | isolate:HS_Canada1

Project description:Pasteurella multocida strain:HS_Canada1 | isolate:HS_Canada1 Genome sequencing and assembly

| PRJNA601446 | ENA

Pasteurella multocida strain:bovine | isolate:bovine

Project description:Pasteurella multocida strain:bovine | isolate:bovine Genome sequencing

| PRJNA1056857 | ENA