Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The prokaryotic community on offshore

ABSTRACT: the prokaryotic community on offshore Raw sequence reads

PROVIDER: PRJNA1069311 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR27903700_1.fastq.gz	Fastqsanger.gz
	SRR27903700_2.fastq.gz	Fastqsanger.gz
	SRR27903800_1.fastq.gz	Fastqsanger.gz
	SRR27903800_2.fastq.gz	Fastqsanger.gz
	SRR27903701_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 252

Similar Datasets

Wheat straw prokaryotic microbial community

Project description:Wheat straw prokaryotic microbial community Raw sequence reads

| PRJNA1232988 | ENA

Surface prokaryotic community in China Sea

Project description:Surface prokaryotic community in China Sea Raw sequence reads

| PRJNA1005344 | ENA

prokaryotic bacterium metagenome

Project description:prokaryotic bacterium metagenome Raw sequence reads

| PRJNA1221977 | ENA

Oceanographic setting influences the prokaryotic community and metabolome in deep-sea sponges

Project description:Marine sponges (phylum Porifera) are leading organisms for the discovery of bioactive compounds from nature. Their often rich and species-specific microbiota is hypothesised to be producing many of these compounds. Yet, environmental influences on the sponge-associated microbiota and bioactive compound production remain elusive. Here, we investigated the changes of microbiota and metabolomes in sponges along a depth range of 1232 m. Using 16S rRNA gene amplicon sequencing and untargeted metabolomics, we assessed prokaryotic and chemical diversities in three deep-sea sponge species: Geodia barretti, Stryphnus fortis, and Weberella bursa. Both prokaryotic communities and metabolome varied significantly with depth, which we hypothesized to be the effect of different water masses. Up to 35.5% of microbial ASVs (amplicon sequence variants) showed significant changes with depth while phylum-level composition of host microbiome remained unchanged. The metabolome varied with depth, with relative quantities of known bioactive compounds increasing or decreasing strongly. Other metabolites varying with depth were compatible solutes regulating osmolarity of the cells. Correlations between prokaryotic community and the bioactive compounds in G. barretti suggested members of Acidobacteria, Proteobacteria, Chloroflexi, or an unclassified prokaryote as potential producers.

2023-05-12 | MTBLS1388 | MetaboLights

Prokaryotic community in hydrocarbon polluted seawater

Project description:Prokaryotic community in hydrocarbon polluted seawater

| PRJNA893820 | ENA

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

Queen conch (Strombus gigas) testis gene expression profiling: offshore versus near-shore

Project description:This study compares gene expression in the testis of three offshore (Pelican Shoal) and three near-shore (Tingler Island) adult male queen conchs (Strombus gigas) collected from the wild on February 15, 2007.

2009-11-01 | GSE17379 | GEO

Prokaryotic community structure of bioaugmented anaerobic digester

Project description:Prokaryotic community structure of bioaugmented anaerobic digester Metagenome

| PRJNA904670 | ENA

Prokaryotic and extracellular vesicles metagenomes

Project description:Prokaryotic and extracellular vesicles metagenomes Raw sequence reads

| PRJNA1222801 | ENA

Laternula elliptica strain:Prokaryotic 16s

Project description:Laternula elliptica strain:Prokaryotic 16s Raw sequence reads

| PRJNA970788 | ENA