Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq analysis of ABA-treated Nicotiana benthamiana seedlings

ABSTRACT: RNA-seq analysis of ABA-treated Nicotiana benthamiana seedlings

PROVIDER: PRJNA1076233 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

RNA-seq analysis of ABA-treated Nicotiana benthamiana seedlings

Project description:Analysis of abscisic acid (ABA) perception and signaling in crops is complicated by the multigenic nature of the PYR/PYL/RCAR ABA receptor family and the reported functional redundancy, which is a formidable challenge, particularly in polyploid plants. Therefore, few molecular genetics studies have been performed in crop species to study the contribution of ABA signaling to balance plant growth and adaptation to the environment. Our data reveal ABA-responsive genes in Nicotiana benthamiana, an allotetraploid biotech crop, and provide a molecular framework for gene expression analyses aimed at optimizing plant growth and environmental adaptation in agriculture. To obtain the genome-wide transcriptional effect of ABA in Nb WT plants, we performed RNA-seq studies as described in experimental procedures. Differential gene expression analysis between mock- and ABA-treated seedlings was done with DESeq2 and genes with an absolute value of log2 fold change (log2FC) > 1 or (log2FC) < -1 and p-adjusted value (padj) < 0.05 were selected

2024-08-13 | GSE255725 | GEO

Nicotiana benthamiana

Project description:Nicotiana benthamiana

| PRJNA256274 | ENA

Small RNAs from Nicotiana benthamiana leaves

Project description:Small RNA expression from Nicotiana benthamiana leaves was profiled with the primary goal of ascertaining microRNA isoform diversity for known, conserved families. A secondary goal was to provide a baseline small RNA expression atlas for this species and tissue.

2014-02-10 | GSE48886 | GEO

RNA sequencing of NlCSP11-infiltrated Nicotiana benthamiana

Project description:In order to find the differentially expressed RNAs and signaling pathways related to the dwarf phenotype induced by NlCSP11, 35S-NlCSP11, 35S-XopQ and 35S-GFP control were infiltrated into Nicotiana benthamiana. We analyzed the differentially expressed RNAs in the infiltrated leaves (NlCSP11_Z/XopQ_Z) and the upper uninfiltrated leaves (NlCSP11_U/XopQ_U) of N. benthamiana. KEGG annotation revealed a large number of differentially expressed RNAs involved in plant-pathogen interactions, indicating that NlCSP11 resulted in a more strong systemic resistance in N. benthamiana.

2024-05-30 | GSE267686 | GEO

Effect of Transcriptional-like Effectors (TALE) on Nicotiana benthamiana leaves

Project description:To investigate gene expression upon inoculation of Nicotiana benthamiana leaves with a TALE inducing cell death

2024-08-08 | GSE221441 | GEO

Effect of Transcriptional-like Effector (TALE) on Nicotiana benthamiana leaves

Project description:To investigate gene expression upon inoculation of Nicotiana benthamiana leaves with a TALE inducing cell death

2024-08-08 | GSE221293 | GEO

Heat- and wound-responsive genes in Nicotiana benthamiana

Project description:Nicotiana benthamiana is a widely used organism for expression of foreign proteins. To increase protein abundance, overexpression promoters have been developed. However, several proteins cause negative effects on plant growth and development when they are overexpressed. Therefore, overexpression promoters cannot be widely used to generate transgenic plants that produce foreign proteins. In this study, we tried to find stress-inducible promoters which specifically express downstream genes when plants were exposed to stress conditions. By RNA-sequencing analysis of heat- and wound-treated plants, we found that NbHSP20 promoters can be used as a heat-inducible promoters to express foreign proteins in N. benthamiana.

2022-08-10 | GSE210621 | GEO

Nicotiana benthamiana

Project description:Nicotiana benthamiana Genome sequencing

| PRJNA29353 | ENA

Nicotiana benthamiana

Project description:Nicotiana benthamiana Organism overview

| PRJNA12911 | ENA

Nicotiana benthamiana

Project description:Nicotiana benthamiana Genome sequencing

| PRJNA256280 | ENA