Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Centroscyllium fabricii

ABSTRACT: Centroscyllium fabricii (black dogfish), sCenFab1

PROVIDER: PRJNA1084042 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR29025303_subreads.fastq.gz	Fastqsanger.gz
	SRR29025304_subreads.fastq.gz	Fastqsanger.gz
	SRR30513711_subreads.fastq.gz	Fastqsanger.gz
	SRR30513712_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Centroscyllium fabricii

Project description:Centroscyllium fabricii (black dogfish) genomic and transcriptomic data

| PRJNA1084041 | ENA

Centroscyllium fabricii

Project description:Centroscyllium fabricii (black dogfish) genome assembly, sCenFab1, alternate haplotype

| PRJNA1155835 | ENA

Centroscyllium fabricii

Project description:Centroscyllium fabricii (black dogfish) genome assembly, sCenFab1, principal haplotype

| PRJNA1155834 | ENA

Centroscyllium fabricii

Project description:Centroscyllium fabricii overview

| PRJNA1084163 | ENA

Metabarcoding data of bacterial diversity of the deep sea shark, <i>Centroscyllium fabricii</i>.

Project description:This data article describes the bacterial diversity of the deep sea shark, Centroscyllium fabricii. The data was acquired by metabarcoding using 16S rDNA. Centroscyllium fabricii, a deep sea shark found at depths below 275 m was sampled during Sagar Sampada cruise no 305 in the Indian Ocean and metagenomic DNA was isolated from the gut contents using QIAamp DNA stool minikit. V3 region of 16S rDNA region was amplified and the amplicons were sequenced on Illumina MiSeq system using 151 bp × 2 paired end reads. The data of this metagenome is available in the BioSample Submission Portal as Bio-Project PRJNA431407and Sequence Read Archive (SRA) accession number SRR6507004.

| S-EPMC6226572 | biostudies-literature

Project description:Bacterial diversity of Centroscyllium fabricii gut

| PRJNA431407 | ENA

Chicken embryo proteome - Quantitative Mass Spectrometry Reveals Partial Translational Regulation for Dosage Compensation in Chicken

Project description:White Leghorn chicken eggs were incubated for 18 days and dissected. Brain, breast muscle, bursa Fabricii, heart, kidney, liver, lung, ovary, spleen, and testicle tissues were sampled.

2015-07-15 | PXD002403 | Pride

Project description:Genome sequencing of Neodiprion fabricii

| PRJNA784631 | ENA

Affymetrix SNP array data for Dwarf and Rhode Island Red chicken samples

Project description:The genetic foundation of chicken tail feather color is not very well studied to date, though that of body feather color is extensively explored. In the present study, we used a synthetic chicken dwarf line (DW), which was originated from the hybrids between a black tail chicken breed, Rhode Island Red (RIR) and a white tail breed, Dwarf Layer (DL), to understand the genetic rules of the white/black tail color. The DW line still contain the individuals with black or white tails, even if the body feather are predominantly red, after more than ten generation of self-crossing and being selected for the body feather color. We firstly performed four crosses using the DW line chickens including black tail male to female, reciprocal crosses between the black and white, and white male to female to elucidate the inheritance pattern of the white/black tail. We found that (i) the white/black tail feather colors are independent of body feather color and (ii) the phenotype are autosomal simple trait and (iii) the white are dominant to the black in the DW lines. Furtherly, we performed a genome-wide association (GWA) analysis to determine the candidate genomic regions underlying the tail feather color by using black tail chickens from the RIR and DW chickens and white individuals from DW lines.

2019-05-02 | GSE130568 | GEO

High throughput sequencing of small RNAs from black pepper (Piper nigrum L.)

Project description:In this study, we used the illumina high throughput sequencing approach (Sequencing-By-Synthesis, or SBS) to develop the sequence resource of black pepper. To identify micro RNAs functioning in stress response of the black pepper plant, small RNA libraries were prepared from the leaf and root of Phytophthora capsici infected plants, leaves from drought stressed and control plants.

2017-08-24 | GSE65782 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data