Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genome sequencing of miscellaneous plant-associated bacteria

PROVIDER: PRJNA1085284 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR28280502_1.fastq.gz	Fastqsanger.gz
	SRR28280502_2.fastq.gz	Fastqsanger.gz
	SRR28280503_1.fastq.gz	Fastqsanger.gz
	SRR28280503_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 54

Similar Datasets

Bacterium strain NS26

Project description:cellular organisms Bacteria unclassified Bacteria unclassified Bacteria (miscellaneous) Genome sequencing

| PRJNA484702 | ENA

Dissecting the co-transcriptome landscape of plants and microbiota

Project description:Interactions between plants and each neighboring microbial species are fundamental building blocks that collectively determine the structure and function of the plant microbiota, but the molecular basis of such interactions is poorly characterized. Here, we monocolonized Arabidopsis leaves with nine plant-associated bacteria from all major phyla of the plant microbiota and profiled co-transcriptomes of plants and bacteria. These strains elicited quantitatively different plant transcriptional responses including typical pattern-triggered immunity responses. Genes of non-pathogenic bacteria involved in general metabolism and energy production were commonly suppressed in planta in contrast to a virulent pathogen. Various nutrient acquisition pathways that are frequently encoded in the genomes of plant-associated bacteria were induced in planta in a strain-specific manner, shedding light on bacterial adaptation to the plant environment and identifying a potential driving force of niche separation. Integrative analyses of plant and bacterial transcriptomes suggested that the transcriptional reprogramming of plants is largely uncoupled from that of bacteria at an early stage of interactions. This study provides insights into how plants discriminate among bacterial strains and sets the foundation for in-depth mechanistic dissection of plant-microbiota interactions.

2021-04-26 | GSE150422 | GEO

Viruses

Project description:Broad miscellaneous virus genome sequencing project

| PRJNA61367 | ENA

Miscellaneous species

Project description:Miscellaneous species: genome sequencing and assembly

| PRJNA935533 | ENA

A multicenter translational biomarker phase II trial of regorafenib in patients with non-resectable pretreated colorectal cancer.

Project description:Primary objectives: The primary objective is to investigate circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS). Primary endpoints: circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS).

| 2533916 | ecrin-mdr-crc

rhizosphere metagenome

Project description:Succession of plant root-associated bacteria during plant development

| PRJDB2621 | ENA

Project description:Miscellaneous samples

| PRJNA1154603 | ENA

Drosophila melanogaster

Project description:DPGP miscellaneous

| PRJNA263409 | ENA

Whole Transcriptome Sequencing (RNA-Seq) of Rhizospheric Bacteria isolated from wheat plant

Project description:This project is designed for whole transcriptome sequencing of bacteria isolated from Rhizosphere of Wheat Plant, which has its impact on overall plant growth.

2024-02-28 | E-MTAB-11516 | biostudies-arrayexpress

Project description:Plant-associated bacteria in an aquaponics system

| PRJNA814115 | ENA