Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Plant-associated bacteria in an aquaponics system

PROVIDER: PRJNA814115 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR18275500.fastq.gz	Fastqsanger.gz
	SRR18275501.fastq.gz	Fastqsanger.gz
	SRR18275502.fastq.gz	Fastqsanger.gz
	SRR18275503.fastq.gz	Fastqsanger.gz
	SRR18275504.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 146

Similar Datasets

Bacteria from aquaponics

Project description:Bacteria from aquaponics Raw sequence reads

| PRJNA609254 | ENA

Project description:Bacteria in aquaponics vs. recirculating aquaculture

| PRJNA929534 | ENA

Project description:Microbial Community Dynamics in Recirculating Aquaponics System

| PRJNA1164197 | ENA

Dissecting the co-transcriptome landscape of plants and microbiota

Project description:Interactions between plants and each neighboring microbial species are fundamental building blocks that collectively determine the structure and function of the plant microbiota, but the molecular basis of such interactions is poorly characterized. Here, we monocolonized Arabidopsis leaves with nine plant-associated bacteria from all major phyla of the plant microbiota and profiled co-transcriptomes of plants and bacteria. These strains elicited quantitatively different plant transcriptional responses including typical pattern-triggered immunity responses. Genes of non-pathogenic bacteria involved in general metabolism and energy production were commonly suppressed in planta in contrast to a virulent pathogen. Various nutrient acquisition pathways that are frequently encoded in the genomes of plant-associated bacteria were induced in planta in a strain-specific manner, shedding light on bacterial adaptation to the plant environment and identifying a potential driving force of niche separation. Integrative analyses of plant and bacterial transcriptomes suggested that the transcriptional reprogramming of plants is largely uncoupled from that of bacteria at an early stage of interactions. This study provides insights into how plants discriminate among bacterial strains and sets the foundation for in-depth mechanistic dissection of plant-microbiota interactions.

2021-04-26 | GSE150422 | GEO

Project description:Negative plant-inoculum feedback limits productivity in aquaponics

| PRJNA641448 | ENA

rhizosphere metagenome

Project description:Succession of plant root-associated bacteria during plant development

| PRJDB2621 | ENA

Microbial diversity in different compartments of an aquaponics system

Project description:Microbial diversity in different compartments of an aquaponics system

| PRJEB15038 | ENA

Project description:Genome sequencing of miscellaneous plant-associated bacteria

| PRJNA1085284 | ENA

biofilm metagenome

Project description:Metagenomic characterization of microbial community in aquaponics during system development

| PRJNA353631 | ENA

The cyanobacterium, Nostoc punctiforme can protect against programmed cell death and induce defence genes in Arabidopsis thaliana.

Project description:Many cyanobacteria can form nitrogen-fixing symbioses with a broad range of plant species. Unlike other plant-bacteria symbioses, little is understood about the immunological responses induced by plant cyanobionts (symbiotic cyanobacteria). Here, we used Arabidopsis thaliana suspension cell cultures as a model system to demonstrate that the model plant-symbiotic cyanobacteria, Nostoc punctiforme is capable of protecting against plant programmed cell death (PCD). We also profiled the early transcriptomic changes that were induced in response to conditioned medium (CM) from N. punctiforme cell cultures. Interestingly, the PCD reduction was preceded by the induction of genes associated with defence and immunity, the most striking of which were a number of WRKY-family transcription factors. Down-regulated included genes involved in the regulation of cell growth and differentiation. This work is the first to show that a cyanobacteria can regulate plant PCD and provides a useful transcriptome resource for studying early plant cell responses to symbiotic cyanobacteria.

2020-12-10 | GSE155980 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data