Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Microbe sample from Saccharina japonica and seawater

ABSTRACT: Microbe sample from Saccharina japonica and seawater Raw sequence reads

PROVIDER: PRJNA1087117 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28327971_1.fastq.gz	Fastqsanger.gz
	SRR28327971_2.fastq.gz	Fastqsanger.gz
	SRR28327972_1.fastq.gz	Fastqsanger.gz
	SRR28327972_2.fastq.gz	Fastqsanger.gz
	SRR28327973_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 48

Similar Datasets

Proteomic response of Saccharina japonica to ocean acidification

Project description:We used proteomic analysis to reveal molecular response of Saccharina japonica to the projected ocean acidification conditions.

2018-10-15 | PXD011219 | Pride

Transcriptome sequencing and comparative expression profiling analysis of Saccharina japonica under blue light

Project description:Saccharina japonica is one of the most important marine economic crops worldwide. Blue light usually plays a significant role in the lives of Saccharina that may be beneficial to the culture system. Here we applied high-throughput paired-end RNA-sequencing (RNA-Seq) to the transcriptome of Saccharina japonica with blue light and dark exposure respectively. Comparative analysis of gene expression was conducted to understand the underlying molecular mechanisms. RNA-seq analysis yielded 70,497 non-redundant unigenes. 25,924 unigenes of them had good comparability with known gene sequences in existing species. Based on the values of RPKM, 11,660 differentially expressed unigenes were detected in expression profiles between blue light and dark exposed samples. Our results provide clues to potential genes identification in the species and lay the foundation for future functional genomics study. mRNA expression of Saccharina japonica with 2 different treatment (sample exposed to Dark condition, and sample exposed to blue light respectively) was determined by method of RNA-Seq

2012-10-02 | E-GEOD-33853 | biostudies-arrayexpress

Transcriptome sequencing and comparative expression profiling analysis of Saccharina japonica under blue light

2012-10-02 | GSE33853 | GEO

Saccharina japonica cultivar:Saccharina japonica

Project description:Saccharina japonica cultivar:Saccharina japonica Raw sequence reads

| PRJNA414034 | ENA

Saccharina japonica

Project description:Saccharina japonica overview

| PRJNA82957 | ENA

Saccharina japonica

Project description:Saccharina japonica Genome sequencing

| PRJNA274218 | ENA