Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: 16S rRNA metagenomic analysis of the gut microbiota of CSI (Chitin Synthesis Inhibitors) bait treated lower and higher subterranean termites

PROVIDER: PRJNA1087145 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR28335406_1.fastq.gz	Fastqsanger.gz
	SRR28335406_2.fastq.gz	Fastqsanger.gz
	SRR28335407_1.fastq.gz	Fastqsanger.gz
	SRR28335407_2.fastq.gz	Fastqsanger.gz
	SRR28335408_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Project description:symbiotic prokaryotic communities of higher and lower termites

| PRJNA532793 | ENA

termite gut metagenome

Project description:Gut metagenomes from 48 lower and higher termites

| PRJNA732531 | ENA

Coptotermes gestroi

Project description:Raw sequence reads of gut bacteria from three bait-treated subterranean termites

| PRJNA1086446 | ENA

Project description:Gut microbial diversity in the lower group of subterranean termites, Coptotermes gestroi and the higher group, Globitermes sulphureus and Macrotermes gilvus

| PRJNA896747 | ENA

Project description:Gut bacterial community of fungus-growing higher termites

| PRJNA689666 | ENA

Project description:Methoprene-induced genes in workers of Formosan subterranean termites

| PRJNA577439 | ENA

Reticulitermes flavipes Cryptotermes secundus

Project description:Transcriptomic response to protist microbiomes in lower termites

| PRJNA715376 | ENA

Systematic evaluation of protein synthesis inhibition through global quantification of newly synthesized protiens

Project description:Manipulating protein synthesis is commonly applied in bio-related research to uncover protein functions and cellular activities. Multiple inhibitors with distinct mechanisms are widely used, but it is extraordinarily challenging to systematically determine and evaluate their inhibition efficiencies, especially for individual proteins. Newly synthesized proteins are direct products of protein synthesis, and thus their comprehensive and quantitative analysis provides a unique opportunity to study protein synthesis inhibition. Here, we systematically investigate and evaluate popular inhibitors through global quantification of nascent proteins in several types of human cells. The same inhibitor results in dramatic differences in the inhibition efficiencies for different proteins, and each inhibitor exhibits unique synthesis inhibition preference. Overall, nucleolar and ribosomal proteins have relatively higher inhibition efficiencies, while the efficiencies of proteins in the peroxisome and the Golgi are lower. The sensitivity of proteins to the inhibition can reflect the characteristics of each cell type. Moreover, proteins generally resistant to the inhibition have lower translation efficiency, among which chaperones are overrepresented. Systematic evaluation of protein synthesis inhibition aids in better understanding protein synthesis regulation and provides valuable information to the biology and biomedicine communities.

2023-05-24 | PXD035992 | Pride

Influence of chitin on the transcriptome of Vibrio coralliilyticus S2052 and Photobacterium galatheae S2753 (V. coralliilyticus)

Project description:Members of the Vibrionaceae family are often found associated with chitin-containing organisms and they are thought to play a major role in chitin degradation. The purpose of the present study was to determine how chitin affected the transcriptome and metabolome of two bioactive Vibrionaceae strains, Vibrio corallilyticus and Photobacterium galatheae. We focused on chitin degradation genes and secondary metabolites based on the assumption that these molecules in nature confer an advantage to the producer. Growth on chitin caused up-regulation of genes related to chitin metabolism and of genes potentially involved in host colonization and/or infection. The expression of genes involved in secondary metabolism was also significantly affected by growth on chitin, in one case being thirty-four folds upregulated. This was reflected in the metabolome, where the antibiotics andrimid and holomycin were produced in higher amounts on chitin. Interestingly, in cultures of P. galatheae grown on chitin we detected high amounts of the biogenic amine phenylethylamine. Overall, these results suggest that both V. coralliilyticus and P. galatheae have a specific lifestyle for growth on chitin, and that the secondary metabolites they produce are likely to play a crucial role during chitin colonization.

2016-12-01 | GSE80781 | GEO

Influence of chitin on the transcriptome of Vibrio coralliilyticus S2052 and Photobacterium galatheae S2753 (P. galatheae)

2016-12-01 | GSE80782 | GEO