Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Dengue virus type 3 strain:Serotype 3

ABSTRACT: dengue virus type 3 strain:Serotype 3 Genome sequencing

PROVIDER: PRJNA1108507 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Human primary macrophages infected with dengue virus serotype 2, strain 16681, and antibody-dependent enhancement of infection

Project description:Human primary monocytes were differentiated for 6days in the presence of M-CSF. The resulting macrophages were infected with dengue virus serotype 2, strain 16681 under the following conditions: Mock, Multiplicity of infection (MOI) 1 without antibodies, MOI 1 with 40ng/mL of irrelevant human antibody, MOI 1 with infection enhancing antibody (40ng/mL of a human monoclonal antibody against dengue), and either MOI 5 or MOI 2.5. Total cell RNA was isolated at 2h post infection or 24h post infection.

2014-12-30 | E-MTAB-3138 | biostudies-arrayexpress

Whole transcriptome sequencing using Huh7 cells transfected with Dengue virus serotype 4 NS1 expressing plasmid.

Project description:To study the role of Dengue virus serotype 4 NS1 in modulation of host cell transcriptome we performed gene expression profiling using data obtained from RNA- sequencing of total RNA from 3 different samples: Huh7 cells (no transfection), Huh7 cells transfected with pTracer-SV40 empty vector and Huh7 cells transfected with pTracer-SV40 encoding dengue virus serotype 4 NS1 (pDENV4 NS1).

2024-11-04 | GSE230787 | GEO

dengue virus type 3 strain:Serotype 3 | isolate:AICBU03.92

Project description:dengue virus type 3 strain:Serotype 3 | isolate:AICBU03.92 Genome sequencing and assembly

| PRJNA1108501 | ENA

dengue virus type 3 strain:Serotype 3 | isolate:AICBU07.03

Project description:dengue virus type 3 strain:Serotype 3 | isolate:AICBU07.03 Genome sequencing and assembly

| PRJNA1108495 | ENA

Dengue virus strain:Serotype 2 New Guinea C

Project description:Dengue virus strain:Serotype 2 New Guinea C Genome sequencing

| PRJNA480864 | ENA

Expression analysis of Aedes aegypti starins Moyo-S and Moyo-R in response to different serotypes of dengue virus

Project description:Investigation of whole genome gene expression level changes in Moyo-S and Moyo-R strains of Aedes aegypti after oral infection of serotype 1, serotype 2, serotype 3 and serotype 4 of dengue virus The Moyo-S is highly suscpetible to dengue infection whereas Moyo-R is refractory to the dengue infection. They have been investigated in our previous studies incluidng Behura et al. (2011). PLoS neglected tropical diseases 5 (11), e1385; and Chauhan et al. (2012). PloS one 7 (10), e47350.

2017-12-30 | GSE56508 | GEO

Dengue virus type 3 strain:BCSIR-05

Project description:Dengue virus type 3 strain:BCSIR-05 Raw sequence reads

| PRJNA762015 | ENA

dengue virus type 2 strain:ET300 backbone

Project description:dengue virus type 2 strain:ET300 backbone Raw sequence reads

| PRJNA1013032 | ENA

Dengue virus type 2 isolate:16681

Project description:Dengue virus type 2 isolate:16681 Variation

| PRJNA941815 | ENA

Myeloid regulation signature persists after virus clearance in mild human primary dengue serotype 2 infection

Project description:Healthy flavivirus-naive volunteers (n=11) were infected with the live attenuated dengue serotype 2 challenge virus (rDEN2delta30) as the control arm of a dengue vaccine challenge trial. Whole blood RNA was collected in Paxgene tubes for expression profiling prior to infection (day 0), and on days 8, and 28 after rDEN2delta30 infection. Whole blood RNA was depleted of globin-and rRNA transcripts and equal amounts of depleted RNAs were used to generate libraries for SE 100 RNA sequencing per sample on by Illumina. To generate technical replicates, each library was run in different flow cells/lanes and aggregated to an average of approximately 26 million reads total per sample with <1% variation in counts across lanes in a given sample. Comparisons of gene expression in count-normalized samples were focused on analysis of grouping data by timepoint as well as by examining consensus intra-subject timepoint-associated gene expression changes after rDEN2delta30 infection, focusing on pairwise comparisons (Day 8 vs Day 0, Day 28 vs Day 8, and Day 28 vs,. Day 0).

2020-06-12 | GSE152255 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data