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Genome-wide profiling of R-loop by affinity-independent and nuclease-based method [RNA-seq]

ABSTRACT: Genome-wide profiling of R-loop by affinity-independent and nuclease-based method [RNA-seq]

PROVIDER: PRJNA1125036 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR29444386_1.fastq.gz	Fastqsanger.gz
	SRR29444386_2.fastq.gz	Fastqsanger.gz
	SRR29444387_1.fastq.gz	Fastqsanger.gz
	SRR29444387_2.fastq.gz	Fastqsanger.gz
	SRR29444388_1.fastq.gz	Fastqsanger.gz

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Genome-wide profiling of R-loop by affinity-independent and nuclease-based method [RNA-seq]

Project description:R-loop is abundant triplex nucleic strand in organism, but many physiological and pathological functions remain to be fully understood, owing to a lack of robust and high-resolution methods for genome-wide detection. In this study, we develop R-loop identification assisted by nuclease and high-throughput sequencing (RIAN-seq), a method to identify and quantify R-loop stoichiometry at affinity-independent enrichment. We reveal that RIAN-seq has ultrahigh sensitivity, accuracy and reliability for identifying R-loop sites, compared with all existing methods. In addition, RIAN-seq enables capturing previously unidentified clustered R-loop sites with distinct patterns. In sum, we reveal that RIAN-seq can not only quantitatively dissect the R-loop landscape at unprecedented resolution, but also provide an unbiased and convenient method for R-loop biology.

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Project description:Genome-wide profiling of R-loop by affinity-independent and nuclease-based method [RIAN-seq]

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BisMapR: a strand-specific, nuclease-based method for genome-wide R-loop detection

Project description:We have developed an antibody-independent and strand-specific R-loop detection strategy, BisMapR, that combines nuclease-based R-loop isolation with non-denaturing bisulfite chemistry to produce high-resolution, genome-wide R-loop sequencing maps.

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