Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Whole Genome Sequencing of Lumpy skin disease virus (LSDV) from Bangladesh

PROVIDER: PRJNA1126022 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR29469192_1.fastq.gz	Fastqsanger.gz
	SRR29469192_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Host transcriptome response to Lumpy Skin Disease (LSD) infection depends on the challenging virus strain

Project description:Ten cattle have been challenged with two Lumpy Skin Disease Virus (LSDV). They were sampled for whole blood immediately before (pre) and three and seven days after (post) infection challenge with two virus strains (H vs. O). The whole RNA-sequencing was done, and 150bp paired reads were assembled as the transcriptome. It was then computationally analyzed to find the differentially expressed genes (DGE) that enrich the gene ontology (GO) terms and KEGG pathways. Depending on the challenged LSDV strain, they influence the host response differently.

2023-06-15 | E-MTAB-12965 | biostudies-arrayexpress

Project description:Whole genome sequence of Lumpy skin disease virus isolated from Bangladesh.

| PRJNA1132589 | ENA

Project description:Whole Genome Sequencing of Lumpy Skin Disease Virus from infected cattle in Bangladesh

| PRJNA1134129 | ENA

Host transcriptome profiling of the Lumpy Skin Disease (LSD) for resilience and susceptibility

Project description:Lumpy Skin Disease (LSD) is an endemic viral infection in Africa, newly emerging in Europe and becoming a global threat. There is host variation in response to infections in field studies and under carefully controlled artificial infections. It’s sometimes around 50% in clinical trials. This study aims to understand the mechanisms underlying this diversity and find the determinants to distinguish between susceptible (recovered) and resistant (non-recovered) animals through Differential Gene Expression (DGE) analysis. Five approximately 6-month-old male Holstein bulls were experimentally infected with LSDV. RNA sequencing was done for whole blood samples collected five days prior (pre-infection) to 3, 7, and 15 days after the infection (post-infection) challenge. After the challenge, two animals recovered, and three did not.

2023-01-28 | E-MTAB-12547 | biostudies-arrayexpress

Project description:Lumpy Skin Disease virus sequencing

| PRJNA639698 | ENA

Project description:Complete genome sequencing of Lumpy skin disease virus isolate Bangladesh LSD Vaccine

| PRJNA1126253 | ENA

Project description:Sequencing and analysis of lumpy skin disease virus whole genomes

| PRJNA1065466 | ENA

Lumpy skin disease virus

Project description:Lumpy skin disease virus Genome sequencing and assembly

| PRJNA998208 | ENA

Project description:Lumpy skin disease virus sequencing in Indonesia

| PRJNA1140204 | ENA