Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Metagenomics of North American Lagomorphs

PROVIDER: PRJNA1127651 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR29544000_1.fastq.gz	Fastqsanger.gz
	SRR29544000_2.fastq.gz	Fastqsanger.gz
	SRR29544100_1.fastq.gz	Fastqsanger.gz
	SRR29544100_2.fastq.gz	Fastqsanger.gz
	SRR29544001_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 280

Similar Datasets

Population genetics context of ancient human genome sequence of an extinct Palaeo-Eskimo

Project description:To study the population genetics context of the Saqqaq individual we carried out Illumina Bead-Array-based genotyping on four native North American and twelve north Asian populations.

2010-11-30 | GSE22494 | GEO

Emory_Pediatric_Strains_1

Project description:Array CGH analysis of Helicobacter pylori strains isolated from a North American cohort of symptomatic pediatric patients. Keywords: genotyping_design

2009-11-05 | GSE13317 | GEO

OKeefe Run 1 2023 Multiplex Metagenomics

Project description:Multiplex metagenomics of North American bat guano

| PRJEB73804 | ENA

A Metagenomics Analysis of Pandemic 2009 H1N1 Infection in Patients in North America

Project description:The Virochip microarray (version 4.0) was used to detect viruses in patients from North America with unexplained influenza-like illness at the onset of the 2009 H1N1 pandemic. We used metagenomics-based technologies (the Virochip microarray) and deep sequencing to analyze nasal swab samples from individuals with 2009 H1N1 infection. This Series includes the Virochip microarray data only.

2010-11-01 | E-GEOD-24034 | biostudies-arrayexpress

RNA sequencing for candidate gene identification for habitat specific clock varaition in natural ecotypes of Neurospora discreta

Project description:Purpose: The goal of the current study was to find the candidate genes responsible for the habita specific clock variation in N. discreta. Methods: We performed RNA-seq experiment using four strains ; African parent (FGSC8831), North American parent (FGSC 8578) and two representative progeny representing African clock phenotype (N309-89) and North American clock phenotype (N309-50). Results: We identified one candidate gene that meets our criteria; confirmed it's expression by qPCR and it's expression pattern is associated with parent genotype. Conclusions: Our approach using the expression profiles and SNP data of two parents and two representative progeny led us to identify a candidate gene for a complex clock adaptation phenotype.

2018-09-18 | GSE120053 | GEO

Gene expression response of wolf epidermal keratinocytes to PolyI:C and canine distemper virus

Project description:The goal of the study was to test whether CBD103 genotype of North American gray wolves impacts the gene expression response to polyI:C or to live canine distemper virus. We established 24 primary cultures of epidermal keratinocytes from skin punches of North American gray wolves, and also generated an immortalized keratinocyte line and a CRISPR/Cas9 edited cell line. We evaluated the gene expression response of cells to either 24 hours challenge with 1 ug/ml polyI:C or to five days challenge with live canine distemper virus (100 TCID50/ml). Every challenged cell culture had a paired null control sample (plated and collected at same time points).

2021-05-06 | GSE163163 | GEO

Bluestem transcription profiles - Konza 2005

Project description:We measured transcriptional profiles of individuals of Andropogon gerardii, a C4 grass native to North American grasslands, in a field experiment in which both temperature and precipitation have been manipulated to simulate key aspects of forecasted climate change.

2009-06-10 | GSE16418 | GEO

The transcriptional profiles of bluestem and Indian grass - Konza 2006 [Zea mays; Andropogon gerardii; Sorghastrum nutans]

Project description:We measured transcriptional profiles of individuals of Andropogon gerardii and Sorghastrum nutans, two C4 grass species native to North American grasslands, in a field experiment in which both temperature and precipitation have been manipulated to simulate key aspects of forecasted climate change.

2012-05-12 | GSE35492 | GEO

Project description:North American Shiners

| PRJNA842507 | ENA

The transcriptional profiles of bluestem and Indian grass - Konza 2006 [Zea mays; Andropogon gerardii; Sorghastrum nutans]

2012-05-11 | E-GEOD-35492 | biostudies-arrayexpress