Project description:The Pacific oyster (Crassostrea gigas) is a kind of marine bivalve of great economic and ecological importance and is among the animals possessing the highest level of genome DNA variations. Despite large efforts made for the discovery of Pacific oyster SNPs in many research groups, challenge still remains as how to utilize SNPs in a high-throughput, transferable and economical manner. In the study, we constructed an oyster 190K SNP array with Affymetrix Axiom genotyping technology. A total of 190,420 SNPs were designed on the chip, which were selected from 54 M SNPs identified by re-sequencing of more than 400 Pacific oysters. Genotyping results from 96 wild oysters indicated that 133,984 (70.4%) SNPs were polymorphic and successfully converted on the chip. Carrying 133K polymorphic SNPs, the oyster 190K SNP array is the first high density SNP chip with the largest throughput currently in mollusc and is commercially available to the worldwide research community.

2017-03-22 | GSE94633 | GEO

Transcriptome sequencing of Pacific oyster Crassostrea gigas

Project description:Deep sequencing of mRNA from Pacific oyster Crassostrea gigas

2014-07-26 | GSE31011 | GEO

miRNA of Pacific oyster Crassostrea gigas for different organs and developmental stages

Project description:miRNA sequencing of Pacific oyster Crassostrea gigas for different organs and developmental stages.

2014-07-26 | GSE31009 | GEO

Geobacillus sp. E263 isolate:East pacific sediment

Project description:Geobacillus sp. E263 isolate:East pacific sediment Genome sequencing

| PRJNA553850 | ENA

Thalassospira sp. A40-3 isolate:West Pacific

Project description:Thalassospira sp. A40-3 isolate:West Pacific Genome sequencing

| PRJNA675455 | ENA

Microeukaryotic assemblages in the western subtropical Pacific Ocean Raw sequence reads

Project description:Microeukaryotic assemblages in the western subtropical Pacific Ocean Raw sequence reads Metagenome

| PRJNA879911 | ENA

Pacific salmon gill samples

Project description:This SuperSeries is composed of the following subset Series: GSE22171: Pacific salmon gill samples: fate tracking in river, sampled in ocean GSE22177: Pacific salmon gill samples: fate tracking in river GSE22347: Pacific salmon gill samples: fate tracking at spawning grounds Refer to individual Series

2010-12-31 | E-GEOD-22179 | biostudies-arrayexpress

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