Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Charybdis japonica resequencing

PROVIDER: PRJNA1150402 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR30326800_1.fastq.gz	Fastqsanger.gz
	SRR30326800_2.fastq.gz	Fastqsanger.gz
	SRR30326801_1.fastq.gz	Fastqsanger.gz
	SRR30326801_2.fastq.gz	Fastqsanger.gz
	SRR30326802_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 244

Similar Datasets

Charybdis japonica

Project description:Charybdis japonica overview

| PRJNA391533 | ENA

Charybdis japonica

Project description:Charybdis japonica Raw sequence reads

| PRJNA902941 | ENA

undefined

Project description:Whole genome of Charybdis japonica

| PRJEB54881 | ENA

Charybdis japonica

Project description:Charybdis japonica Raw sequence reads

| PRJNA793994 | ENA

Charybdis japonica

Project description:Charybdis japonica Transcriptome or Gene expression

| PRJNA391371 | ENA

Project description:Effects of berberine hydrochloride on immune response in the crab Charybdis japonica

| PRJNA819826 | ENA

Charybdis natator

Project description:Charybdis natator overview

| PRJNA414935 | ENA

Charybdis feriata

Project description:Charybdis feriata overview

| PRJNA428122 | ENA

ChIP-seq of holocentric Chionographis japonica to determine the centromere distribution and genome organization

Project description:To determine the distribution of centromere units in the genome of holocentric Chionographis japonica, we performed CENH3-ChIPseq using the customized species-specific CENH3 antibody. We mixed the chromatins of C. japonica and Secale cereal (inbred line Lo7) to dilute the highly abundant centromeric Chio satellite repeats (16%) in the C. japonica genome before immunoprecipitation. In addition, to determine the large-scale genome organization, we performed ChIPseq by targeting the evolutionarily conserved eu- and heterochromatin-specific histone marks H3K4me2 and H33K9me2

2023-05-08 | GSE228407 | GEO

Multi-omics resources for targeted agronomic improvement of pigmented rice

Project description:<p>Pigmented rice (<em>Oryza sativa L.</em>) is a rich source of nutrients, but pigmented lines typically have long life cycles and limited productivity. Here we generated genome assemblies of 5 pigmented rice varieties and evaluated the genetic variation among 51 pigmented rice varieties by resequencing an additional 46 varieties. Phylogenetic analyses divided the pigmented varieties into four varietal groups: Geng-japonica, Xian-indica, circum-Aus and circum-Basmati. Metabolomics and ionomics profiling revealed that black rice varieties are rich in aromatic secondary metabolites. We established a regeneration and transformation system and used CRISPR-Cas9 to knock out three flowering time repressors (Hd2, Hd4 and Hd5) in the black Indonesian rice Cempo Ireng, resulting in an early maturing variety with shorter stature. Our study thus provides a multi-omics resource for understanding and improving Asian pigmented rice.</p>

2023-03-27 | MTBLS3320 | MetaboLights

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data