Project description:Three populations of T. putrescentiae with a known microbiome were analyzed using label-free nanoLC-MS/MS analysis. Two homogenization procedures were performed - one with a glass homogenizer (for the 3X6 dataset) and the second with beads/shards (for the 3X3 dataset). The latter was used due to its potential higher yield of bacterial proteins.
Two raw datasets (3X6 and 3X3) from the nanoLC-MS/MS analysis are included.
Compressed (zipped) combined_txt folders of database searches in MaxQuant are included. In addition, used databases (*.fasta) are provided.