Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: GBTS data of F2 population obtained from 'Cabernet Sauvignon' and 'Huadong1058' crossing

PROVIDER: PRJNA1155249 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR30505500_1.fastq.gz	Fastqsanger.gz
	SRR30505500_2.fastq.gz	Fastqsanger.gz
	SRR30505501_1.fastq.gz	Fastqsanger.gz
	SRR30505501_2.fastq.gz	Fastqsanger.gz
	SRR30505502_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 340

Similar Datasets

Gene expression differences between dwarf and normal individuals of F2 population CSxRGM_F2 of grapevine

Project description:Gene expression differences between grapevines with a dwarf and normal phenotype of an F2 population of a cross between Vitis vinifera cv. Cabernet Sauvignon x V. riparia cv Riparia Gloire de Montpellier called CSxRGM_F2. Gene expression profiling was done using the Nimblegen whole genome array with 5 biological replicates.

2020-01-29 | E-MTAB-2472 | biostudies-arrayexpress

Gene expression during graft union formation in auto- and hetero-grafts of grapevine

Project description:Transcriptional changes occurring at the graft interface of auto- (Cabernet Sauvignon/ Cabernet Sauvignon) and hetero-grafted (Cabernet Sauvignon/ Riparia Gloire de Montpellier and Cabernet Sauvignon /1103 Paulsen) grapevine. Gene expression profiling was done using the Nimblegen whole genome array with 3 biological replicates of 15 pooled graft interfaces harvested 3, 7, 14 and 28 d after grafting.

2014-04-09 | E-MTAB-1610 | biostudies-arrayexpress

Cramer- Short-term Shoot Tip - Transcript abundance profiles reveal larger and more complex responses of grapevine to chilling compared to osmotic and salinity stress

Project description:Shoot tips of Cabernet Sauvignon were exposed to chilling, salinity or dehydration (PEG) for short durations.

2010-08-09 | PRD000218 | Pride

Grape skin transcriptome to reveal genes related with resveratrol accumulation

Project description:Methods:transcriptomes of the different development stages of Vitis vinifera cv. Cabernet Sauvignon and Vitis quinquangularis accession Danfeng-2 were analyzed using Illumina Hiseq 2500. The sequence reads that passed quality filters were analyzed: TopHat followed by Cufflinks. mRNA profiles of different development stages of Vitis vinifera cv. Cabernet Sauvignon and Vitis quinquangularis accession Danfeng-2 were generated by deep sequencing, in triplicate, using Illumina Hiseq 2500.

2015-12-23 | E-GEOD-76256 | biostudies-arrayexpress

Grape skin transcriptome to reveal genes related with resveratrol accumulation

2015-12-23 | GSE76256 | GEO

Transcription profiling of Cabernet Sauvignon grape vine leaves from plantlets infected with the fungal pathogen Eutypa lata

Project description:Cabernet Sauvignon in vitro plantlets were experimentally infected with the E. lata strain NE85-1 and compared to healthy controls.

2009-08-07 | E-MEXP-2102 | biostudies-arrayexpress

Highlighting the dramatic effects of high temperature on developing Cabernet Sauvignon grape berry through proteomic and metabolomic approaches

Project description:The goal of this project aims to decipher the molecular effects of high temperature on developing Cabernet Sauvignon berries. Using grapevine fruiting cuttings, control and heat-treated berries were sampled to conduct transcriptomic, proteomic and metabolomic analysis.

2020-01-29 | PXD014693 | Pride

Expression data from prostate tumors of TRAMPxPWK/PhJ F2 cross

Project description:We hypothesize that germline variation influences susceptibility to aggressive prostate tumor We examined the changes in gene expression in tumors obtained from TRAMPxPWK/PhJ F2 mice Transgene-positive (Tg+) F2 males were bred by crossing Tg- sires to Tg+ dames. 27 tumor samples were analyzed, which were obtained from Tg+ F2 males

2015-12-15 | E-GEOD-61864 | biostudies-arrayexpress

Diel multi-tissue genome-scale metabolic models of Vitis vinifera

Project description:The first GSSM of V. vinifera was reconstructed (MODEL2408120001). Tissue-specific models for stem, leaf, and berry of the Cabernet Sauvignon cultivar were generated from the original model, through the integration of RNA-Seq data. These models have been merged into diel multi-tissue models to study the interactions between tissues at light and dark phases.

2024-09-02 | MODEL2408160001 | BioModels

Auto-grafting in grapevine 3 and 28 days after grafting

Project description:The analysis of the genes differentially expressed in the rootstock and the callus 3 and 28 d after grafting in grapevine (Vitis vinifera cv Cabernet Sauvignon) auto-grafts.

2013-05-31 | E-MEXP-3803 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data