Project description:Gill proteome samples from four populations of threespined sticklebacks; Six biological replicates each for 4 different populations: Bodega Harbor, CA (fully plated, marine), Lake Solano (low-plated, freshwater), Laguna de la Bocana del Rosario, Mexico (low plated, brackish water, warm-adapted), Westchester Lagoon, AK (fully plated, brackish water); More information and results of data analysis at CAMP Proteome, accession number CAMPDDA00023 (https://kueltzlab.ucdavis.edu/CAMP_dda_profiles.cfm?AC=CAMPDDA00023).
2017-12-09 | MSV000081795 | MassIVE
Project description:Metagenome of Laguna de Pena Hueca, Spain
| PRJNA501804 | ENA
Project description:Microbial diversity from Laguna Interna, Salar de Atacama
Project description:Bathymodiolin mussels are a group of bivalves associated with deep-sea reducing habitats, such as hydrothermal vents and cold seeps. These mussels usually engage in an obligatory symbiosis with sulfur and/or methane oxidizing Gammaproteobacteria. In addition to these bacteria, Bathymodiolus heckerae that inhabit gas and oil seeps in Campeche Bay, the southern Gulf of Mexico, host bacteria phylogenetically with the Cycloclasticus genus. We recently discovered the capability for short-chain alkane degradation in draft genomes of symbiotic Cycloclasticus. With proteomics, we investigated whether the genes required for this process are expressed by the symbionts.
Project description:This study used virological, histological, immunological and global gene expression to compare the virlence of two newly emerged 2009 H1N1 isolates (A/Mexico/InDRE4487/2009 and A/Mexico/4108/2009) and current seasonal H1N1 influenza strain (A/Kawasaki/UTK-4/2009) in experimentally infected cynomolgus macaques. We showed that infection of macaques with two genetically similar but clinically distinct SOIV isolates from the early stage of the pandemic (A/Mexico/4108/2009 and A/Mexico/InDRE4487/2009) resulted in upper and lower respiratory tract infections and clinical disease ranging from mild to severe pneumonia. Disease associated with these SOIV isolates was clearly advanced over the mild infection caused by A/Kawasaki/UTK-4/2009, a current seasonal strain.
Project description:We determined Streptomyces coelicolor genes that are directly regulated by WblC (or WhiB7), an actinobacterial transcription factor that activates expression of intrinsic resistance in response to translation-inhibitory antibiotic stress. Identification of differentially expressed genes in wblC mutant by RNA-seq and WblC binding sites in wild type by ChIP-seq identified more than 300 genes as WblC regulon. This series encompasses the ChIP-seq data of our study.
2020-03-28 | GSE136166 | GEO
Project description:Three de novo Lamiaceae genomes
| PRJNA814311 | ENA
Project description:Historic Treponema pallidum genomes from Colonial Mexico
| PRJEB21276 | ENA
Project description:LAND USE CHANGE IN NEVADO DE TOLUCA,MEXICO
