Similar Datasets
Project description:Converted from profile raw to centroid mzML data with ThermoRawFileParser executable through macOS:
Algae bloom simulation Lab 8 for the course Untargeted Metabolomics Summer School 2022
2022-08-23 | MSV000090183 | MassIVE
Project description:Converted from profile raw to centroid mzML data with ThermoRawFileParser executable through macOS:
Algae bloom simulation Lab 8 for the course Untargeted Metabolomics Summer School 2022
2022-08-23 | MSV000090183 | GNPS
Project description:Hemolymph from mated and unmated honey bee queens collected in summer 2022.
2024-01-10 | MSV000093805 | MassIVE
Project description:Subset of MassIVE MSV000085944 data published by Panitchpakdi and collaborators (2022) used during Metabolomics Summer School 2023 at Statens Serum Institut, Copenhagen.
Panitchpakdi M, Weldon KC, Jarmusch AK, Gentry EC, Choi A, Sepulveda Y, et al. (2022) Non-invasive skin sampling detects systemically administered drugs in humans. PLoS ONE 17(7): e0271794. https://doi.org/10.1371/journal.pone.0271794
2023-06-29 | MSV000092307 | GNPS
Project description:study of diphenhydramine in blood and skin - untargeted mass spectrometry analysis [doi:10.25345/C5SJ2X] - reupload for summer school
2023-07-10 | MSV000092389 | GNPS
Project description:To examine the difference of the endometrial conditions in the cows between on summer and autumn seasons, gene expression profiles were compared. The expressions of 268 genes were significantly higher in the endometrium collected on summer than those on autumn, whereas 369 genes were lower (P<0.05 or lower). Transcripts of GP2 and NTS were more abundant in the endometrium of summer than those of autumn (P<0.05). In contrast, the mRNA expressions of CDH1 and HSPH1 were lower in the endometrium of summer seasons (P<0.1). Collectively, the different gene expression profiles may contribute to functional differences of endometrium between the summer and autumn seasons, and GP2 and NTS may have a relevance to endometrial deficiency that cause infertility of cows on summer seasons.
2015-02-19 | GSE66057 | GEO
Project description:We used a DNA microarray chip covering 369 resistance types to investigate the relation of antibiotic resistance gene diversity with humans’ age. Metagenomic DNA from fecal samples of 123 healthy volunteers of four different age groups, i.e. pre-school Children (CH), School Children (SC), High School Students (HSS) and Adults (AD) were used for hybridization. The results showed that 80 different gene types were recovered from the 123 individuals gut microbiota, among which 25 were present in CH, 37 in SC, 58 in HSS and 72 in AD. Further analysis indicated that antibiotic resistance genes in groups of CH, SC and AD can be independently clustered, and those ones in group HSS are more divergent. The detailed analysis of antibiotic resistance genes in human gut is further described in the paper DNA microarray analysis reveals the antibiotic resistance gene diversity in human gut microbiota is age-related submitted to Sentific Reports
2014-01-16 | GSE54070 | GEO
Project description:The outbreak-causing monkeypox virus of 2022 (2022 MPXV) is classified as a clade IIb strain and phylogenetically distinct from prior endemic MPXV strains (clades I or IIa), suggesting that its virological properties may also differ. Here, we used human keratinocytes and induced pluripotent stem cell-derived colon organoids to examine the efficiency of viral growth in these cells and the MPXV infection-mediated host responses. MPXV replication was much more productive in keratinocytes than in colon organoids. We observed that MPXV infections, regardless of strain, caused cellular dysfunction and mitochondrial damage in keratinocytes. Notably, a significant increase in the expression of hypoxia-related genes was observed specifically in 2022 MPXV-infected keratinocytes. Our comparison of virological features between 2022 MPXV and prior endemic MPXV strains revealed signaling pathways potentially involved with the cellular damages caused by MPXV infections and highlights host vulnerabilities that could be utilized as protective therapeutic strategies against human mpox in the future.
2023-06-06 | GSE219036 | GEO
Project description:As training dataset for Random Promoter DREAM Challenge 2022, we generated ~6.7 million synthetic promoters (in yeast) comprised of random DNA (N80) and measured their expression by FACS (sorting into 18 bins). As test dataset for Random Promoter DREAM Challenge 2022, we generated ~71k synthetic promoters (in yeast) comprised of designed DNA (NBT) and measured their expression by FACS (sorting into 18 bins).
2024-02-03 | GSE254493 | GEO