Project description:Endogenous antimicrobial peptides (AMPs) are evolutionarily ancient factors of innate immunity, which are produced by all multicellular organisms and play a key role in their protection against infection. Red king crab (Paralithodes camtschaticus), also called Kamchatka crab, is widely distributed and the best known species of all king crabs belonging to the family Lithodidae. Despite their economic importance, the genetic resources of king crabs are scarcely known and no full-genome sequences are available to date. Therefore, analysis of the red king crab transcriptome and identification and characterization of its AMPs could potentially contribute to the development of novel antimicrobial drug candidates when antibiotic resistance has become a global health threat. In this study, we sequenced the P. camtschaticus transcriptomes from carapace, tail flap and leg tissues using an Illumina NGS platform. Libraries were systematically analyzed for gene expression profiles along with AMP prediction. By an in silico approach using public databases we defined 49 cDNAs encoding for AMP candidates belonging to diverse families and functional classes, including buforins, crustins, paralithocins, and ALFs (anti-lipopolysaccharide factors). We analyzed expression patterns of 27 AMP genes. The highest expression was found for Paralithocin 1 and Crustin 3, with more than 8,000 reads. Other paralithocins, ALFs, crustins and ubiquicidins were among medium expressed genes. This transcriptome data set and AMPs provide a solid baseline for further functional analysis in P. camtschaticus. Results from the current study contribute also to the future application of red king crab as a bio-resource in addition to its being a known seafood delicacy.
Project description:Acoustic telemetry allows for high-resolution, long-term tracking of moving animals. Here, we describe data on the movement patterns of 37 adult red king crab (RKC, Paralithodes camtschaticus) obtained by means of acoustic telemetry. Acoustically tagged RKC were released in Gamvikfjorden (Sørøya, northern Norway) the 24th of May 2016 and tracked until the 1st of November 2016. Individual crabs resided in the fjord for 1-162 days and were recorded 16 - 11,501 times (mean number of records per crab: 2,851). In total, the data set consist of 105,484 pairs of accurate spatio-temporal coordinates. The acoustic receivers (n = 38) deployed close to the seabed were integrated with temperature sensors that continuously recorded the ambient seawater temperature, resulting in 174,154 water temperature recordings. These novel tracking data can be used to investigate the species' migratory behaviour, spatio-temporal habitat selection, and the relative role of their environment and their possible food sources. Moreover, the high-resolution seawater temperature dataset may serve independently as input data in physical-oceanographic models of this sub-Arctic sill fjord.
