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ABSTRACT: Marchantia polymorpha RNAseq

PROVIDER: PRJNA1182233 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR31229323_1.fastq.gz	Fastqsanger.gz
	SRR31229323_2.fastq.gz	Fastqsanger.gz
	SRR31229324_1.fastq.gz	Fastqsanger.gz
	SRR31229324_2.fastq.gz	Fastqsanger.gz
	SRR31229325_1.fastq.gz	Fastqsanger.gz

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Project description:Marchantia polymorpha RNAseq

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Transcriptome changes triggered by the loss of function of gene Mppcs in genome-edited Marchantia polymorpha plants

Project description:In the present study, Marchantia polymorpha Mppcs loss of function mutants were generated through CRISPR/cas9 mediated genome-editing. To assess whether the knockout of MpPCS gene affects the transcription of M. polymorpha nuclear genes in unstressed condition, the Mppcs-2 knockout mutant and Cam2 wild-type transcriptomes were compared by RNA-Seq.

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DE-ETIOLATED1 has a role in the circadian clock of the liverwort Marchantia polymorpha

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Comparative transcriptomic analysis of Marchantia polymorpha BoGa and the MpB-GATA1 mutants Mpb-gata1-1 and Mpb-gata1-2

Project description:RNA-seq of Marchantia polymorpha Mpb-gata1 mutants was performed in order to investigate their molecular signature of gene expression changes.

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Project description:To understand a role of MpMET in maintenance of cytpsine methylation and transposon silencing, we obtained a genome wide profile of 5-methylated cytosine from the Mpmet mutant of a model liverwort, Marchantia polymorpha.

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Project description:Most of our current knowledge about the molecular events ruling plant-virus interaction come from studies focusing on vascular plants. We here characterized the molecular, cellular and physiological events goberning plant-virus interactions in the non-vascular liverwort Marchantia polymorpha.

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Analysis of local and systemic wound response in Marchantia polymorpha

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Effect of PRC2 loss of function on gene and TE expression in Marchantia polymorpha

Project description:To evaluate role of PRC2 on transcriptional regulation in bryophytes, we generated loss of function mutants of a Ez homolog in Marchantia polymorpha by CRISPR/Cas9 based mutagenesis. To avoid lethality of PRC2 knockout, we first mutate MpKNOX2 gene then additionally knocked MpEz1 out. Then we performed comparative transcriptome analyses using data obtained from Mpknox2 ez1 and Mpknox2.

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Marchantia polymorpha strain:TAK-1

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