Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Blastocystis

ABSTRACT: Blastocystis shepherd dogs Portugal

PROVIDER: PRJNA1184492 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR31305400_1.fastq.gz	Fastqsanger.gz
	SRR31305396_1.fastq.gz	Fastqsanger.gz
	SRR31305397_1.fastq.gz	Fastqsanger.gz
	SRR31305398_1.fastq.gz	Fastqsanger.gz
	SRR31305399_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Blastocystis sp.

Project description:Blastocystis spp. SSUrRNA

| PRJNA498756 | ENA

Blastocystis

Project description:Blastocystis isolate genome sequencing and assembly

| PRJNA1078866 | ENA

Blastocystis sp.

Project description:Blastocystis sp. Targeted Locus (Loci)

| PRJNA987751 | ENA

Blastocystis hominis

Project description:Blastocystis hominis Genome sequencing and assembly

| PRJNA475779 | ENA

Proteogenomic of Blastocystis sp. subtype 4 isolate WR1

Project description:description Blastocystis sp. is a highly prevalent anaerobic eukaryotic parasite of humans and animals. The genome of several representatives has been sequenced revealing specific traits such as an intriguing 3’-end processing of primary transcripts. We have acquired a first high-throughput proteomics dataset on the difficult to cultivate ST4 isolate WR1 and detected 2,761 proteins. We evidenced for the first time by proteogenomics a functional termination codon derived from transcript polyadenylation for seven different key cellular components.

2017-09-11 | PXD006588 | Pride

Blastocystis sp. HerGr

Project description:Blastocystis sp. HerGr Genome sequencing and assembly

| PRJNA1185180 | ENA

Blastocystis sp. RusS

Project description:Blastocystis sp. RusS Genome sequencing and assembly

| PRJNA1185195 | ENA

Blastocystis hominis

Project description:Blastocystis positive stool samples grown in Jones medium Metagenomic assembly

| PRJNA482946 | ENA

Blastocystis Xoxocotla

Project description:Influence of Blastocystis on the intestinal bacteriome and eukaryome of asymptomatic humans

| PRJEB26627 | ENA

Genomic reconstruction of Galápagos dog history reveals strategies for management of an invasive species

Project description:Free-breeding dogs have occupied the Galápagos islands at least since the 1830s, however, it was not until the 1900s that dog populations grew substantially, endangering wildlife and spreading disease. In 1981, authorities sanctioned the culling of free-roaming dogs. Yet there are currently large free-roaming dog populations of unknown ancestry on the islands of Isabela and Santa Cruz, whose ancestry has never been assessed on a genome-wide scale. Thus, we performed a complete genomic analysis of the current Galápagos dog population as well as historical Galápagos dogs sampled between 1969 and 2003, testing for population structure, admixture, and shared ancestry. Our dataset included samples from 187 modern and six historical Galápagos dogs, together with whole genome sequence from over 2,000 modern purebred and village dogs. Our results indicate that modern Galápagos dogs are recently admixed with purebred dogs but show no evidence of a population bottleneck related to the culling. Additionally, IBD analyses reveal evidence of shared shepherd-dog ancestry in the historical Galápagos dogs. Overall, our results demonstrate that the 1980s culling of dogs was ineffective in controlling population size and did little to reduce genetic diversity, instead producing a stable and expanding population with genomic signatures of historical dogs remaining today. The insights from this study can be used to improve population control strategies for the Galápagos Islands and other endangered endemic communities worldwide.

2024-10-01 | GSE276576 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data