Proteomics

Dataset Information

0

Proteogenomic of Blastocystis sp. subtype 4 isolate WR1

ABSTRACT: description Blastocystis sp. is a highly prevalent anaerobic eukaryotic parasite of humans and animals. The genome of several representatives has been sequenced revealing specific traits such as an intriguing 3’-end processing of primary transcripts. We have acquired a first high-throughput proteomics dataset on the difficult to cultivate ST4 isolate WR1 and detected 2,761 proteins. We evidenced for the first time by proteogenomics a functional termination codon derived from transcript polyadenylation for seven different key cellular components.

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Blastocystis

SUBMITTER: Jean ARMENGAUD  

LAB HEAD: Jean Armengaud

PROVIDER: PXD006588 | Pride | 2017-09-11

REPOSITORIES: pride

Json Xml

Dataset's files

Source:
Action DRS
Blastocystis-sp.subtype4Txid944170_RefSeq_2017-07-04.fasta Fasta
Blastocystis.sp.st4extraitNCBI-serie110-5-tube10r1_mascot_daemon_merge.mgf Mgf
Blastocystis.sp.st4extraitNCBI-serie110-5-tube10r3_mascot_daemon_merge.mgf Mgf
Blastocystis.sp.st4extraitNCBI-serie127-4-tube2r3_mascot_daemon_merge.mgf Mgf
Blastocystis.sp.st4extraitNCBI-serie1274-tube2r1_mascot_daemon_merge.mgf Mgf
Items per page:
1 - 5 of 66
altmetric image

Publications

Proteogenomic Insights into the Intestinal Parasite Blastocystis sp. Subtype 4 Isolate WR1.

Armengaud Jean J   Pible Olivier O   Gaillard Jean-Charles JC   Cian Amandine A   Gantois Nausicaa N   Tan Kevin S W KSW   Chabé Magali M   Viscogliosi Eric E  

Proteomics 20171016 21

Blastocystis sp. is known for years as a highly prevalent anaerobic eukaryotic parasite of humans and animals. Several monophyletic clades have been delineated based on molecular data, and the occurrence of each subtype in humans and/or animal hosts has been documented. The genome of several representatives has been sequenced revealing specific traits such as an intriguing 3'-end processing of primary transcripts. Here, a first high-throughput proteomics dataset acquired on this difficult-to-cul  ...[more]

Similar Datasets

Transcriptomics The Nrd1-like protein Seb1 coordinates co-transcriptional 3’ end processing and polyadenylation site selection
2016-07-22 | E-GEOD-82326 | biostudies-arrayexpress
Genomics Yeast RNase III triggers polyadenylation independent transcription termination
2009-10-09 | GSE16784 | GEO
Proteomics Identification of CDK9 targets using DRB and quantitative phosphoproteomics
2022-08-22 | PXD026720 | Pride
Other The Nrd1-like protein Seb1 coordinates co-transcriptional 3’ end processing and polyadenylation site selection
2016-07-22 | GSE82326 | GEO
Proteomics Characterization of the SF3B1 interactome
2022-08-22 | PXD033694 | Pride
Transcriptomics The Sen1 Helicase Prevents Genome-Wide Spurious Transcription by Controlling Transcription Termination by RNAPII
2010-01-01 | GSE17559 | GEO
Transcriptomics CDK9 and PP2A regulate RNA polymerase II transcription termination and coupled RNA maturation
2022-08-22 | GSE176541 | GEO
Transcriptomics The Sen1 Helicase Prevents Spurious Transcription by Controlling Genome-Wide Transcription Termination by RNAPII
2011-06-01 | E-GEOD-19015 | biostudies-arrayexpress
Genomics Saccharomyces cerevisiae
| PRJNA117539 | ENA
Transcriptomics Genome-wide mapping of yeast RNA polymerase II termination
2014-07-24 | E-GEOD-56435 | biostudies-arrayexpress