Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Solanum lycopersicum

ABSTRACT: High-throughput sequencing of small RNAs from different developmental stages of tomato fruits

PROVIDER: PRJNA119405 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR039920.fastq.gz	Fastqsanger.gz
	SRR039921.fastq.gz	Fastqsanger.gz
	SRR039922.fastq.gz	Fastqsanger.gz
	SRR039923.fastq.gz	Fastqsanger.gz
	SRR039924.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Solanum lycopersicum cultivar:Heinz1706

Project description:Transcription profiles of tomato (Solanum lycopersicum) Heinz1706 fruits at different developmental stages

| PRJNA1046278 | ENA

High-throughput pyrosequencing of endogenous small RNAs from Solanum lycopersicum leaf and fruit

Project description:Comparison of the endogenous small RNA content of tomato leaves and fruits.

2008-08-22 | GSE12081 | GEO

High-throughput pyrosequencing of endogenous small RNAs from Solanum lycopersicum leaf and fruit

Project description:Comparison of the endogenous small RNA content of tomato leaves and fruits. Size fractionated small RNA from total RNA extracts was ligated to adapters, purified again and reverse transcribed. After PCR amplification the sample was subjected to 454 high throughput pyrosequencing. Please see www.454.com for details of the sequencing technology. Note: Raw data files were not available from 454 at the time this experiment was carried out.

2008-08-21 | E-GEOD-12081 | biostudies-arrayexpress

High-throughput sequencing of small RNAs from different developmental stages of tomato fruits

Project description:Comparison of endogenous small RNA profiles from different developmental stages of tomato fruits

2011-06-02 | GSE18110 | GEO

High-throughput sequencing of small RNAs from different developmental stages of tomato fruits

Project description:Comparison of endogenous small RNA profiles from different developmental stages of tomato fruits Size fractionated small RNA from total RNA extracts was ligated to adaptors, purified again and reverse transcribed. After PCR amplification the sample was subjected to Solexa/Illumina high throughput pyrosequencing. Please see www.illumina.com for details of the sequencing technology.

2011-06-02 | E-GEOD-18110 | biostudies-arrayexpress

Solanum lycopersicum

Project description:Comparison of fruit metabolites among developmental stages of tomato

| PRJDB14168 | ENA

Solanum lycopersicum Transcriptome or Gene expression

Project description:To provide insights into how SUN regulates shape and whether this is accompanied with shifts in transcript profiles, we identified differentially expressed genes in eight pairwise comparisons of SUN and wild-type fruit tissues and time points. Lines nearly isogenic for SUN in the cultivated background Solanum lycopersicum c.v. SUN1642 were grown in the greenhouse in a completely randomized design. SA4 is like SUN1642 and SA3 is like WT LA1589 at SUN locus. Flowers at anthesis were tagged and self-pollinated on successive days. Anthesis is defined as when the flower opens. Pollination of flowers was staggered so fruit of all developmental stages would be harvested on the same day. Fruits at stage four, seven, and ten days post anthesis (dpa) were harvested and brought back to the laboratory. Septum, seed, and pericarp tissue were isolated and frozen in liquid nitrogen. Four dpa septum tissues is a mixture of septum and seed tissue. Four dpa pericarp is a mixture of pericarp and exocarp tissue due to small size of four dpa fruits. Seven and 10 dpa pericarp dont contain the exocarp (epidermal) tissues. Four replicates were collected. RNA was extracted using Trizol and Stand-specific libraries were prepared from total RNA and sequences of 51 bp were generated on an Illumina HiSeq2000.

2013-12-10 | E-MTAB-4837 | biostudies-arrayexpress

Solanum lycopersicum

Project description:Transcriptome analysis at four fruit developmental stages of tomato (Solanum lycopersicum)

| PRJNA663979 | ENA

Solanum lycopersicum

Project description:Large scale sequencing of small RNAs in tomato plants

| PRJNA288085 | ENA

Next Generation Sequencing Facilitates Quantitative Analysis of Solanum lycopersicum Flower Transcriptomes

Project description:RNA sequencing in tomato for detect mRNA expression of Solanum lycopersicum flower.The two cultivars (monomaker, raceme) had three different flowering stages (budlet, Flower bud, Full bloom) for transcriptome sequencing

2021-08-11 | GSE163914 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data