Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Environmental pathogens from Nigeria

PROVIDER: PRJNA1197493 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR31698791_1.fastq.gz	Fastqsanger.gz
	SRR31698791_2.fastq.gz	Fastqsanger.gz
	SRR31698792_1.fastq.gz	Fastqsanger.gz
	SRR31698792_2.fastq.gz	Fastqsanger.gz
	SRR31698793_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Project description:Environmental pathogens of public health significance

| PRJNA1198203 | ENA

Project description:Environmental pathogens on public health significance

| PRJNA1197186 | ENA

Project description:Metabarcoding of amphibian pathogens from environmental samples

| PRJNA611823 | ENA

Project description:Epidemiology of Acinetobacter baumannii from hospital and environmental sources in Nigeria

| PRJNA878801 | ENA

Bacteria

Project description:LIMM/UFRJ: Genomes of pathogens from environmental water

| PRJNA636101 | ENA

RNA-seq based transcriptome analysis of plant pathogens under salt stress condition

Project description:Plant pathogens require lethal virulence factors, susceptible hosts, and optimal environmental conditions for disease establishment. High soil salinity, exacerbated by climate change, significantly impacts agro-biological ecosystems. However, the overall interactions between plant pathogens and salt stress are not fully characterized or understood. This study examines the effects of salt stress on representative plant pathogens: Burkholderia gladioli, Pectobacterium carotovorum subsp. carotovorum, and Ralstonia solanacearum. Using pan-genome-based comparative transcriptomics, we analyzed the comprehensive alterations within the biological systems of plant pathogens when treated with 200 mM NaCl. Our results highlight the differential responses between salt-sensitive and salt-tolerant pathogens to salt stress.

2024-08-08 | GSE272984 | GEO

Project description:Human Metagenomics Nigeria

| PRJNA824010 | ENA

Transcriptional analysis of temperature regulation in Yersinia pestis

Project description:Temperature is a key environmental factor for facultative pathogens during the host adaptation response. To assess the functional role of temperature in Yersinia pestis, a microarray study was conducted comparing the Δpgm (pigmentation-negative) R88 strain grown at 37°C or 30°C.

2016-01-01 | GSE30333 | GEO

Chromatin dynamics of Phytophthora during host infection [ChIP-seq]

Project description:Dynamic regulation of silencing histone marks, specifically H3K9me3 and H3K27me3, provide effector gene expression plasticity, which enables adaptative responses to environmental fluctuations in plant fungal pathogens. It remains an unanswered question whether the epigenetic regulatory mechanisms governing gene expression during infection stages in Phytophthora are the same as in fungal pathogens. We performed chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq) of three histone modifications, H3K4me3, H3K36me3, and H3K27me3 in P. sojae and P. infestans, encompassing both the mycelium stage, and infection stages (12h post-inoculation (hpi), and 24hpi in soybean, as well as 3dpi in potato respectively).Integrative analysis of ChIP-seq and RNA-seq data of mycelium and infection stages was performed.Overall, our work provides a comprehensive and detailed view of distinctive chromatin dynamic patterns during the infection stages of Phytophthora.

2024-12-18 | GSE260750 | GEO

Project description:Recreational hot springs as environmental reservoir of potential multidrug-resistant pathogens

| PRJEB61745 | ENA