Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Arabidopsis thaliana msh1 mutant and wild type mutation accumulation line sequencing

PROVIDER: PRJNA1201229 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR31797700_1.fastq.gz	Fastqsanger.gz
	SRR31797700_2.fastq.gz	Fastqsanger.gz
	SRR31797701_1.fastq.gz	Fastqsanger.gz
	SRR31797701_2.fastq.gz	Fastqsanger.gz
	SRR31797702_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 82

Similar Datasets

mRNA sequencing of msh1 memory line in arbidopsis

Project description:MSH1 depletion caused whole genome wide gene expression changes in Arabidopsis, to conduct comparative genomic analysis, here we generate gene expression profile for wild type and msh1 memory line

2018-06-01 | GSE106536 | GEO

High-throughput Illumina sequencing of bisulfite transformed genomic DNA from Arabidopsis thaliana wild-type, msh1 mutant and MSH1-epiF3 lines

Project description:Arabidopsis msh1 mutants display developmental reprogramming (dr) phenotypes, include reduction in growth, enhanced branching, and delayed maturation and flowering time. MSH1-epi lines were derived by crossing MSH-dr lines with Col-0 wild type, followed by selection for homozygous MSH1/MSH1 F2 plants and serial self-pollination. MSH1-epiF3 plants displayed phenotypic variation in plant growth, showing enhanced growth, larger rosette diameter, thicker floral stems and earlier flowering time. We carried bisulfite sequencing and uncover the methylome changes accompany the heritable MSH1-epi phenotypes that condition dramatic variation in plant growth. 3 samples examined: wild type, Msh1-epiF3, msh1 mutant

2014-01-01 | E-GEOD-36783 | biostudies-arrayexpress

Transcript profiling of Arabidopsis albino msh1 mutants

Project description:The soybean msh1 RNAi transgenic line show various growth phenotype. We use microarray analysis to characterize gene expression pattern for two of the phenotypes - variegation and stunted growth. Wild type and Arabidopsis msh1 mutant albino tissues were collected for RNA extration and hybridization on Affymetrix.

2011-11-29 | E-GEOD-30281 | biostudies-arrayexpress

Transcript profiling of Arabidopsis epiF3 plants

Project description:Arabidopsis msh1 mutants display developmental reprogramming (dr) phenotypes, include reduction in growth, enhanced branching, and delayed maturation and flowering time. MSH1-epi lines were derived by crossing msh1 lines with Col-0 wild type, followed by selection for homozygous MSH1/MSH1 F2 plants and serial self-pollination. MSH1-epiF3 plants displayed phenotypic variation in plant growth, showing enhanced growth, larger rosette diameter, thicker floral stems and earlier flowering time. We carried bisulfite sequencing and uncover the methylome changes accompany the heritable MSH1-epi phenotypes that condition dramatic variation in plant growth. Arabidopsis Col-0 wild type and epiF3 plant tissues were collected for RNA extration and hybridization on Affymetrix.

2013-12-01 | E-GEOD-43993 | biostudies-arrayexpress

Heritable enhanced growth vigor through grafting is associated with the RdDM pathway in plants [tomato_graft_methylome]

Project description:Bisulfite (methylome) sequencing of progenies of Rutgers CV. Wild type grafted on Rutgers MSH1-RNAi line; Rutgers CV. Wild type grafted on Rutgers Wild type

2020-09-20 | GSE152568 | GEO

Transcript profiling of Arabidopsis epiF3 plants

Project description:Arabidopsis msh1 mutants display developmental reprogramming (dr) phenotypes, include reduction in growth, enhanced branching, and delayed maturation and flowering time. MSH1-epi lines were derived by crossing msh1 lines with Col-0 wild type, followed by selection for homozygous MSH1/MSH1 F2 plants and serial self-pollination. MSH1-epiF3 plants displayed phenotypic variation in plant growth, showing enhanced growth, larger rosette diameter, thicker floral stems and earlier flowering time. We carried bisulfite sequencing and uncover the methylome changes accompany the heritable MSH1-epi phenotypes that condition dramatic variation in plant growth.

2013-12-01 | GSE43993 | GEO

Transcript profiling of Arabidopsis msh1 mutants

Project description:The Arabidopsis msh1 mutant show various growth phenotype. We use microarray analysis to characterize gene expression pattern for two of the phenotypes - variegation and stunted growth. Wild type and msh1 RNAi variegated and stunted tissues were collected for RNA extration and hybridization on Affymetrix.

2012-07-11 | E-GEOD-35893 | biostudies-arrayexpress

High-throughput Illumina sequencing of bisulfite transformed genomic DNA from Arabidopsis thaliana wild-type, msh1 mutant and MSH1-epiF3 lines

2014-01-01 | GSE36783 | GEO

Global methylation in Arabidopsis plants after multigenerational exposure to high temperatures

Project description:We conducted whole-genome bisulfite sequencing (WGBS) of Arabidopsis thaliana mutation accumulation (MA) lines under different temperature treatments over sucessive generations, and then we identified the global methylation in each MA line. Our result showed taht DNA methylation was observed more frequently at DNA mutation sites, indicating its contribution to the mutation process at elevated temperatures.

2021-05-01 | GSE173660 | GEO

Arabidopsis thaliana

Project description:High-throughput Illumina sequencing of bisulfite transformed genomic DNA from Arabidopsis thaliana wild-type, msh1 mutant and MSH1-epiF3 lines

| PRJNA156713 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data