Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Distinguishing the physiological states of bacteria in the environment using the Triple-metabarcoding approach.

PROVIDER: PRJNA1202647 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR31824100_1.fastq.gz	Fastqsanger.gz
	SRR31824100_2.fastq.gz	Fastqsanger.gz
	SRR31824200_1.fastq.gz	Fastqsanger.gz
	SRR31824200_2.fastq.gz	Fastqsanger.gz
	SRR31824101_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 432

Similar Datasets

Project description:Distinguishing the physiological states of archaea in the environment using the Triple-metabarcoding approach

| PRJNA1203040 | ENA

Project description:Distinguishing the physiological states of microeukaryotes in the environment using the Triple-metabarcoding approach.

| PRJNA1203028 | ENA

Rhizobium etli CFN42 wild type transcriptional profiling was compared between free living and symbiosis conditions

Project description:Rhizobium etli is a bacteria that fix nitrogen in symbiotic activity with Phaseolus vulgaris, the common bean plant. In order to accomplish this nitrogen reduction a especial environment is induced in nodules such that gene expression of bacteroid suffer a significant change with respect to its wild type life style. With the purpose to identify genetic alterations between these physiological states, replicates of microarray data were accomplished in similar conditions between bacteria cultivated in free-life (succinate-ammonia) and those carrying on nitrogen fixation inside nodule. Three independent biological materials with one dyeswap were performed.

2014-02-03 | E-GEOD-21638 | biostudies-arrayexpress

Rhizobium etli CFN42 wild type transcriptional profiling was compared between free living and symbiosis conditions

2014-02-03 | GSE21638 | GEO

Experimental selection of long-term intracellular mycobacteria

Project description:Some intracellular bacteria are known to cause long-term infections for periods of time that last decades without compromising the viability of the host. Although of critical importance, the changes that intracellular bacteria suffer during this long process of residence in a host cell environment remain obscure. Here, we report an experimental approach to study the adaptations of intracellular mycobacteria forced by a long-term intracellular lifestyle. Long-term infection of host macrophages with mycobacteria was maintained for a period of years. Mycobacteria in the long-term infected macrophages underwent an adaptation process leading to impaired phenolic glycolipids (PGL) synthesis, preference for glucose as a carbon source and neutral lipids accumulation. These changes correlated with increased survival of mycobacteria in macrophages and mice during re-infection and specific expression of stress- and survival-related genes. Our findings identify bacterial traits implicated in the establishment of long-term cellular infections and represent a tool for understanding the physiological states of bacteria living in fluctuating intracellular environments.

2014-12-31 | GSE49976 | GEO

Project description:Surface microbiome of Saccharina latissima using metabarcoding approach

| PRJNA1108713 | ENA

E-MTAB-7076

Project description:Whole transcriptome profiling of the steady state and Hh-treated (8 hrs) Alpk1+/- (heterozygous) and Alpk1-/- (knockout) BMDMs using RNA-Sequencing approach

2018-09-17 | E-MTAB-7076 | ExpressionAtlas

Project description:Simultaneous identification of insect interactions using a metabarcoding approach

| PRJNA1150198 | ENA

Physiological replication of the glomerulus using a triple culture microphysiological system.

Project description:Physiological replication of the glomerulus using a triple culture microphysiological system.

| PRJNA870592 | ENA

Psychroflexus torquis 1D LC/MS

Project description:Proteorhodopsin has been an ongoing hot topic for the past decade. However the complete physiological role of this extremely widely distributed protein remains mysterious. In this study we aim to give an insight to the physiology of a proteorhodopsin-containing sea ice bacteria – Psychroflexus torquis using gel-free label-free proteomic approach for the first time. We also addressed the life strategy that used by this organism to successfully inhabit extreme sea ice environment.

2015-07-24 | PXD000673 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data