Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mus musculus

ABSTRACT: Genome-wide maps of Tbx3 binding sites in mouse ESCs

PROVIDER: PRJNA120841 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR032469.fastq.gz	Fastqsanger.gz
	SRR032470.fastq.gz	Fastqsanger.gz
	SRR032471.fastq.gz	Fastqsanger.gz
	SRR032472.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Mus musculus

Project description:Genome-wide maps of Rai1 binding sites in mouse cortex

| PRJNA320884 | ENA

Mus musculus

Project description:Genome-wide maps of RAP1 binding sites.

| PRJNA124659 | ENA

Genome-wide maps of Tbx3 binding sites in mouse ESCs

Project description:Induced pluripotent stem (iPS) cells can be obtained through the introduction of defined factors into somatic cells. The combination of Oct4, Sox2 and Klf4 (OSK) constitutes the minimal requirement for generating iPS cells from mouse embryonic fibroblasts (MEFs). Through the genomic analyses of ESC genes that have roles in pluripotency and fusion-mediated somatic cell reprogramming, we identified Tbx3 as a transcription factor that significantly improves the quality of iPS cells. Induced-PS cells generated with OSK + Tbx3 (OSKT) are superior in both germ cell contribution to the gonads and germ-line transmission frequency. However, global gene expression profiling could not distinguish between OSK and OSKT iPS cells. Genome-wide ChIP-sequencing analysis of Tbx3 binding sites in ESCs suggests that Tbx3 regulates pluripotency-associated and reprogramming factors, in addition to sharing many common downstream regulatory targets with Oct4, Sox2, Nanog and Smad1. ChIP-seq of Tbx3 binding in mouse ESCs

2009-12-04 | E-GEOD-19219 | biostudies-arrayexpress

Mus musculus

Project description:Genome-wide maps of Foxa2 binding sites in mouse embryonic stem cell-derived definitive endoderm cells

| PRJNA173922 | ENA

Mus musculus

Project description:Genome wide WT1 binding sites in developing mouse kidneys

| PRJNA251516 | ENA

Mus musculus

Project description:Genome-Wide CRX Binding Sites in adult mouse photoreceptors

| PRJNA130929 | ENA

Mus musculus

Project description:Genome-wide maps of EGR1 binding in mouse frontal cortex

| PRJNA280040 | ENA

Mus musculus

Project description:Genome-wide maps of EGR2 transcription factor binding sites in T cell anergy

| PRJNA198451 | ENA

Mus musculus

Project description:Genome wide map of Tfcp2l1 binding sites from mouse kidney

| PRJNA347358 | ENA

Mus musculus

Project description:Genome-wide maps of transcriptional factor binding in mouse erythroid cells.

| PRJNA207667 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data